RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2462

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

19066674

End:

19067641

Strand:

+

Ref_name:

OSA-LNCN2462

Sequence
(OSA-LNCN2462.1):

CCGGAGGAGGUGGCGGCGCCGUCGCGGGGCCCCUCGCCGGCGCGCGUGCUCACCCUAGGCAGAGCGCGCCGCCGUCGAGCGGCCUUGUGACGGUGUGGUCGGCGCCCUCUCGUCUCCCCCCGGCUUCGGCGACGGCCGGCGACGGCGGUGGAUGGGGAAACACGGCGGCGCCAUCUUUUCUUUUCUCUUCUCUUCUCCCCCCACCGUCUCUAGCCCCCACCGCGAAGUGAGAGAAAGAGGGCGGCGGCCGAAGGAGAUGGCGGCGCCGCCGCGGCCCCCCUCGCCGGCACGCGCGUGCACCCGCGGGUGCGCGCACGGCCGUCGAGUUGCUCCUAGGUGGUGCCUCUUUGCCCCUCCCCCCUCCGUUGCCGGCGUCAACGACGGCCGGCGACGAGGUAAGAUUAGGGUUAGGGUUUUUCUUUUCGUUCCGUCGGAUCGUUUGCUUUUCUUUGCUUUUCUCUUUGGAUUUCUUUCCCGAACCAAUCUAAACACUAGGGUUGCUCUGAUACCAUUGUUAGUGUUGUCUAUUAGAUCACCUAGGUUUAGAUCUAGUCGGGUGGUUCUAUUUGCGAUGGAUGAUUGAACAACAAUAGAGAAUAAGGGAAAGGGUUUAGGGAUGUGACCGGUUGACACGUUGGAUGAAGAGGAAGUCCCGGCCAUCGUCGUUGUCGUCGCUCUGCUUGACAUGGGCGGCGGCGGUGAUGGUGGUCGUGACAGCGACGGUGCUGCGCGGCAGUGGUGGUCGUAGGGGAUCCCGGCGAGGUCGUGGCGCGGCGGUGGAGUCUUCCCGUCACUGGCUGCGCCCCCUCGAUCGGUUAGGCCUCGUUCGGCACGUGGGGAGGGAUUUCCCUGGGGGAAACACCACCAGUCCAGGGUUGGGUGUUAAACCCCCAUGCUAUUCGGAUGGGGAAAACAGGGGAAAAGCAGGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

342

LEP:

69.51%

ME_num:

124

MEP:

25.2%

HE_num:

25

HEP:

5.08%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.91

Avg Expression:

7.29

Tip: OSA-LNCN2462 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h8.11290485093241.97517032687287e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-1.610915373756360.00677968160723283
3WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h5.205064812378670.0290617801480848
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.667259312514171.42411370866971e-06
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.244486247562630.0174039675176317