Chr:
Chr12
Start:
18565300
End:
18566784
Strand:
.
Ref_name:
OSA-LNCN2447
Sequence
(OSA-LNCN2447.1):
CCUCUCCUGAUAUUUUAACUUUCACCAUCCUUAUCAUAUCCUAUCCUCUCCUCUCCUCUCAGCCUCUCGCUCUUUCCUCCUCUCCUCUCUCUCUCACCGACGGCUAGGACGGGAGCGGCGCGGCAACGGCGGGCUUGGCACCGGCGGUGGCGGCCUCCCUUCCCCGACCUCCCAUCCGACGCAGCACCGGCGGGCUCGGUACCGGCGACGGCCUCCCUUCCCUGACCUCCCAUGGGCAGUGGCGACCUCCCUUCCCCGACGGCGGUGGGCACGGUGACGACGACGGCCGCGGUUGGCCGGCACGGCGGCUAAUCCGGCGGUACUAUCCUCGGGAGGGCCGGAUUCUCCACCCUACGGAGGAGCUCGGCGUGUGGCGGGCACAGCGACGGCCGCCGGUGGCAGAUCUGGACGACGGGCGCGCAGCGGGCACGACGACGGCCGGCGGCGGCGAUCCUCCCCCCUCCCCUCAACGCCGCGGCGGCAGGGGCGGCUCGGCCGCCUCGGGCAGCGCUGCCCCGCGCCGAUUCGGUGCCAUCGACGACGGCGGGCGGCAGGGGCGACAGAUCCGGCGACGGCGUGCGGUGGGGACACAGCUUCCGGCGGCGGGCUAGGGUUUGGGGUUUUUUAGAUUUUUUUUGUUUGCCGAAUUUAUUUUCACAUGCGUCCGGUAUAAGCGACCGCAUGUAAAAAUGGGAUUGCCCAUUUUCGCUUGCGGUUGCGCCGGGCGCAUGCAAAAAGAGCGAUUUUUGCAGACGAUCUCGCCCGCAUGGAAAGACCCUUGUAGCCUGCAUGAAAAAACACUUUUUCAGUAGUGUGUGAUGGAAUUUUUAGAAGUUUGAAGGGAACUAAACACUGCCAGAGUCCGUUAUUUGACACCAUUCUACAACGCCUUUAGGUUGGAGCGACCGGCCGAUUUUUUCCUCGGAGCAUGGGGCGCCCGAGAGAAAGUAUUCUCCCACAUUAUGUGGACGAGCUGUCUAUCUAUAAAAUUCUAAAUAUUUAAACCAUUUUGGUUCUUGAAAUUAUUUCCUAAAUACAUGUCAUUGCAUAUGACCCUAUGUAGAGUUGGCACCUGCCCGGAAAGCCCAAGUCAAACAUAUGCAUGCAUUAGUCUUUGCGCAUGGCUUGACACAUUACUCACCCGACAAACAACGUUGUCGGAGCAAGUUAAGAUCGUGGUACGGACUACAAGUACAAACCCAUCCCAUGAGCAACACAUGUGGAAGUACCAUUUGAGUGCUCGAAUUCCAUUAUAUAGUCAACUCAUUGGACUUAAUUAUCCAAGCGGUAGUGCUGCUCGUGUUAGCUAGCUUUGACCGGCCGGCAGGCGAAAAUGAUUUUCCAGCGCAAAGAAAAAAAAAAGAUCACCAAUUCCUCAUUUUACGGAUUGCGACAAAAGGAAAUUGGAAAUGAACAUGAACACAUGAUGCAACAUCAAUCCACAUCCAGAGAGACGGAUCAACACGAAACACAUCAUCAACAGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
37.2%
ME_num:
MEP:
32.32%
HE_num:
HEP:
30.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.78
Avg Expression:
13.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -10.667718603504 | 7.61853438427562e-15 |
2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.74384275519532 | 3.02784892607742e-15 |
3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.33686721636757 | 0.00139807132792116 |
4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -9.49851911970063 | 2.57747222429262e-11 |
5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.0970806333611 | 0.000447374878044644 |
6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.06467090466136 | 8.5126235943843e-07 |