Chr:
Chr12
Start:
18411202
End:
18411824
Strand:
.
Ref_name:
OSA-LNCN2444
Sequence
(OSA-LNCN2444.1):
UUUUUACCCUUACUUUUUUGAACUGAAUGCUUGUUUUGCCUCUACUUUGGAUGGUGAAGUUAACGGUGUUAAGUAAUUGAUAAAAUGACGUUUAUACCCUCUCAUGUAUGUUCAUUAAUUGUGUUUUUGUCCCCAUUUUAUACAUGUAGCUUUGGAACUUUAUUUUUGGGAGUAUAUUUAAAAUUAGAUGACGCACAUUGACUAAUAUAACAAUUUGGACAAAUUCUGAAUUUGAUGGAAUUUUGAUAAAAUUUCAGCAUUUUGAUAGAACUUAAACAAAAUUUUGACAACAUUUUGUAAAAUGUAAUUAUCUGUUCCUUUAGAUAUUAGUCAAUGUGCUUCAUGUAAUUUUAAAUAUACUCACAAAAAUAAAGUUCUAAAGCUACAUGCAUAAAAUGGGGACAAAAACACAAUUAAUGAGCAUAUAUGAGAGGGUAUAAAUGUCAUUUUGUCAAUUACUUAAUACCGUUAACUUCACCAUCCAAAGUAGGGGCAAAACAAGCGUUCAGUUUAAAAAAGUGAGGGUAAAAACGAAAACCCUAAAAAGUAGGGGUAAAAUCAAUAUUAGACAUCAGAGUAGGGGCAGAAACGAAAUUGUCCCAUAGAAAAAAGGGUGGAGGGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.98%
ME_num:
MEP:
22.76%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.95
Avg Expression:
5.09
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.14726845976813 | 0.00320495950577978 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.87797033879851 | 2.98742832745636e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.62495289379086 | 2.30053511382601e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.18784728357143 | 6.74667203898487e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.35940464821513 | 2.04530791984447e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.57563207539729 | 1.97240674583775e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.31189336545866 | 0.0011756939554486 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.62911670181733 | 3.31479383453627e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.5243687814833 | 2.74038094416737e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.26316303336777 | 0.000590080059649939 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.50315091503014 | 0.000201436198431446 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.31811027592162 | 5.36373744522602e-10 |