Chr:
Chr12
Start:
17924158
End:
17940270
Strand:
-
Ref_name:
OSA-LNCN2435
Sequence
(OSA-LNCN2435.1):
GGCAAUUAAUUGAUAGACCCUCAACUUCACAAUGGACCCACCAAACUUUCCACUGUCUAACUAUUCGUCAGGGUCUAAAAAAGGAAGCAAAAAACAUGGCUGAGGAGGUAGCAAAGAUUAAUUAAUCGAGAAGUUGUGCAAGCAUCCACAUAUACAAAUAUCAAAUUGUUAUCUGCAUCUAUAUAUAGUUGGUGGAGACGCCAGAAUUAUCUAAAGAAAAUCAGAAUGCCUUGAAAAAAAAAGAGAGGUACACGAGGGUGGGAAUGAGAUGUAUUCAGGAAACAGGUGACAAGAACAAGAUUCAUUGUGGAUCAAGUAGGAUCGGAAGGUCAACAUGACCUGAUUGAUUGCCAACAUAUGGUGAGAAGUACACAGCCUCAUGCUUACCAGCAGUAGGUGCUUUCAACCGCCUACAUGGUGGAUCCAUUCUGUUCUGUAAAAAAUGCUACCGAUGGGGAUAGGAAACUUCUGAGUGUAGUUUCUACGACUCCCCUCUGCAGUUUUCAAUUGUUUUGUCGUGCAAUUUGGGUUCAUAAGUCUGAACAACAUCAAUCACAAGUCCGCAAGAAACUCAUUGCUUUUGCAACAAAUUUGCGUGGAUUUUGAUUAGCUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
18.29%
ME_num:
MEP:
71.14%
HE_num:
HEP:
10.37%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.70
Avg Expression:
5.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -3.14973485933218 | 0.00745744980916798 |
| 2 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.24674340242155 | 0.0214276907211178 |
| 3 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -3.97109029676134 | 0.00671415475032674 |