RiceNCexp:Browse

OSA-LNCN2434

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr12

Start:

17958457

End:

17967868

Strand:

Ref_name:

OSA-LNCN2434

Sequence
(OSA-LNCN2434.1):

AGAGAGGGGAGUUGGAAUUGGACAGACUGAAAUAGGCUAUAAGUUAGAUUCAUAUAUCAAACUCAGUGAAGAAGGUUCAUUAUCUCCUUGUUACAAUAGGGUUCAUCCUCUUCCACUUAGAACAUAUCAUCAUCCUCCACUGUAACAUUGACACUAUCUCAUAGAGUAAGAACACAGGAGUAGGGUGUUACAUUCCCGAGCGGCCUGAACCUGUAUAAACCAUGUGUACUCACUCCCAUACGUGCCCAGUGCACGAGCUCGGAAUGUGCACCCUGGUCAAACUCUAAAAGGGGUAUCAUGCCUUCCCACUAAAGAAGAUCCUCGCUCCGACAAAUGUAGUCAUUGGACCCAUAGAAAAGGCCACGUGGGUGUGACAUAUCAUACUCAUAUAUAAUUAUAGCAACAAAAUGACCAUUCUACCCUUACACACACACACACCAUAUUAAAGAAAAAUAAAGAAAAACAAAACAGAAAUAACGGGACA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

434

LEP:

88.21%

ME_num:

MEP:

7.11%

HE_num:

HEP:

4.47%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

embryo

Tau :

0.94

Avg Expression:

4.87

Tip: OSA-LNCN2434 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-1.08336406834302	0.0475831180821451
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-1.08639507694798	0.0491109292146043
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-1.93280356210707	0.000225034624348481
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-1.6070928330956	0.0197093033101273
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-1.23187852659636	0.03365468014217
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-1.75985332026768	0.0041459991936811
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-1.37880890306788	0.0059488035618959
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-1.96313026207854	0.000218627388988837
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-1.50462404620325	0.00585948965647633
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-1.2076719749269	0.00608241898210878