Chr:
Chr12
Start:
17868894
End:
17869742
Strand:
.
Ref_name:
OSA-LNCN2433
Sequence
(OSA-LNCN2433.1):
CACCACACCACGUCCAACCAAUUCACCAAAUCCUAGCCUAGAAGGACCACAAGAACAGGCACUUGCCGCGGCGGCGCUCCAUCCACCACGCACAGGCACAACCGCAUCGCAAUCCUCAUCUCGUUGCUUCGAGCUCCGCCUAUAAUGAAUCCCCCUCGGGCGCCCCUCCAGUUGCAUACGAGCUGCGCCGCCUCCCUAGUGAACUCCUCUCCUUCCCGUCUUGUGCCUCUGCGAGUGCACCACGCCGCCACGCCAUUCGCCAUCUGCCCCCUGCCUUGGGCAGUUGGGCUCUCUCUCGGGUGUCUGAGGUGGGCAGGCGGCGAGGCCACGAUCGCGAGGCGACGAGACAUCGAUCGUGGAGAACGAAGACAACGAGUGAGCAUUUCCGCCAUGGCUAUCAAGUGUUGAUUCACAAAUCAAGAAGGAAACGCAGCUAAGUCACGAAUCCACAGCCACUGCAUACUGCAGGUUGGCGUAGCCCCUCUCUCUCUCUCUCCUGCAUCGCCCGUCGACCGUCAUUGCUAGCUAUUGAUGGCCAGAGCUCGCGAGCUAAUCGAGCUAGCUCGAGCUCUCAAACGAGCCGAGCCGAGCUGAGCUAGCUUGUUAUCCUAAUUAGCCGAGUCAAGCCGGCUCGAUAUCAACCCCUAGCUCUAACUAGUAAUAUGCGUGUAUGUUGUAACAUGUAAGACCCAUAUAAUUAAGAAAAGGCUAAGAAAGUGAUUGAGAAACAUAGAUAUGGUGAUUACACAAAUGUAAUAAGGAAGGGGUGAUGGAAGUACGACUACAUUUUAUCAGUAGUAAAAACAAAAUGGUCCUAUAAUCUUACUUACCUACCAGCUAUUUUUUUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
65.04%
ME_num:
MEP:
33.33%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
2.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.74382459047418 | 0.00166542828433786 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.36664700690064 | 0.045761142724831 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.00382097579185 | 0.0305344127968648 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.5330403450533 | 0.0487404962977923 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.74014505930654 | 0.00509789334016085 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -2.40987640622151 | 0.040478065514898 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.73315489058039 | 1.51364880737167e-08 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.24640867200991 | 0.0242072212979207 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.59800629281327 | 0.000676106164154123 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.2969128266993 | 0.0369072355257918 |
| 11 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.86223100168527 | 0.0276149041183744 |