Chr:
Chr12
Start:
17464179
End:
17464833
Strand:
+
Ref_name:
OSA-LNCN2426
Sequence
(OSA-LNCN2426.1):
CUGUUCGUGACACGUGUCGCUGGUCAAAGGACACGUGGCACACGUGAUCUGAAGCAGAGAAGACUCAAAAAUCCAAACUCUUGAUCCAAAAUUAAAAGCUUGUUACUGCCACGUGUGGGCGUGGCUGGUCAAAUCACACGUGAGCAGAAGCUUUGGCGCAAGAAGCAGAGUAAAAGUGGUAAUCCUAAUCAAUUUCUCCUCAAAUAAAAGAACACCAAAAUUAAAACUGUCUUUUGUAAAUCAGACUCAAAACGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
50.0%
ME_num:
MEP:
30.28%
HE_num:
HEP:
19.51%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.82
Avg Expression:
23.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.76134777182817 | 6.77928552355018e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.12300792405274 | 9.81789386694494e-22 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.78648652727188 | 3.61288023632276e-21 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.27679431377735 | 1.61875965403531e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.85057550009518 | 2.61463437357501e-13 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -7.01005486974435 | 1.37064594803065e-10 |
| 7 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 3.05655092650359 | 3.04045002818206e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.12533099791206 | 7.80993967423203e-21 |
| 9 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.15508531597836 | 1.57341890290252e-06 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.19109385837022 | 3.23120076263255e-05 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 6.00079746424841 | 1.16477104603938e-24 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.45311157554385 | 0.0307526465834348 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.80154564732974 | 5.5578757272566e-31 |
| 14 | 9311 // leaf // control--/--9311 // leaf // salt | 2.49421780727818 | 1.19719138605918e-10 |
| 15 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 4.3210708332142 | 0.0243203842755301 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.69045597095682 | 2.05050070514531e-20 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -7.30082699057669 | 1.95180816926428e-16 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.51785574241934 | 0.0270321507651507 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.32848160222924 | 0.0246732993468197 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.44663626930586 | 0.033367383744336 |
| 21 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 7.33540171061285 | 1.44287017987781e-10 |
| 22 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 7.33531729463657 | 1.46134385315999e-10 |
| 23 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 7.33522209642839 | 1.44876462809485e-10 |
| 24 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.38674042554771 | 8.2476094509144e-19 |
| 25 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.31990807785834 | 1.95946667013427e-15 |
| 26 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.42894239359932 | 3.2190139125853e-06 |
| 27 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.99559735131051 | 7.35380803941428e-19 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -7.02729695715357 | 7.2471185704017e-20 |