OSA-LNCN2401


Function Link


Basic Info

Chr:

Chr12

Start:

16201723

End:

16204059

Strand:

-

Ref_name:

OSA-LNCN2401

Sequence
(OSA-LNCN2401.1):

GCCAGCUAACUAGCUAGCUAGGAUCAUCACCACGACAGGUGCUGGCUAUGUCCAUGUUAGGAUUCAUGAAACAUAUCAUGUAAAUCAACAAGAAAUUCUCUAUUUCUUUUAAUAAAUCGGUACAAACUAUGCCCAUUCGGUUGAUACAGAGGGAAAAAAUUACAGGCCCUAGGGAAAAGGAAAAACGAUUACAAAUGUGAGGUCAUCUUGAGGAGGUGCUUUGCACCUGCCAUUGCGUAUGUCCACGCUUCUCCAUUGAUCUUUACGAAGAACCAAAUGGCUCAGGUUUCAUGGUUGUCGAAGAAAGUGAAUACAAUUUCAGUUCAAAAUUUCCCAAAUUUCGGAAACCCACUCCCCCACGCAAGUGGAGUACAACUCUCUUCCAUUUUACACCAACAAGUUGAGUACAACUCACUUAUACACUUAGCCAUUGCUCUAGUAGGGUUGGAAGAAAGUGAGAGAAAGCUCCAAAAGGAGUGCAUCAAAUGUCGGAGUUCUCUCUGGGGUUUCAUAUGAGUGCCGGAGAUGCCGACACUCUCCCUGAUCUUGUACCUUGACGAAUGCUUCUUUUAUAAGUAUUCAUAAUCUCAUUAGGUAUUUAUUUUUCUUAUUUGAGUAAAAUAUAUUCUCAUCGUUGCGGUUCAUCACUCUGCUUAGGUAGAGUACUUUAAUCUUCUAUGUGGAUCCGAGAUUAGGGUAGUAAUUAAUAGCAUUGAUGUGGUGUCUAGGCUAUAGGUUACCUUUAUUUGUUGUGUGCUCCACGGGUCGCAGAGGUAGGCGGCUAGUGAUGACAGUCAUGUCCGUCCUUCGUAAUCCUCCACGUUCGCCGGAGGCUCCUUAGCAAACCUGGGGUAAGCCGGUGCCUAAAGCAAUUGAUAGAGUUUUACCUUAAUUAAGAUAAUUAACCCAUUGGAAUCCUAUCUAUCCUCAGCCUACCAUUUAGGUGUUGUUCUUGGAUGAAUCACAUUCUUAGAUUGUACAGACACGUUCCCUGUGGAUACGAUACCCUGGAAUACUCUUAGGUAAUGGCUACAACGGUAUUUGUGCGCUUGCAUAUUAUUCUGUAGUCAUAACAAAUACCGACCCUACACUACUACACCCCGAUACUAGAUGCAGUAGCAACAAAUUUCUAUCGUUAGAUCUUAUGUGUUCAACGGCCCACAUCCAUCCAAAUGUGCACUAAAAUAAUCUAUCUUCUUCAUUGAGAAUUGCAUUUUGCAUUUAUUUUUCUUUUCAGGGGAGACUACACUUUUCAACUGCUUUUUCAGGCUUUCAGCAAAUAUAUGCCUAGUCUUCCCCCCAACUUGAUUGUGGACACCAUACAUAUGUACAUACACGUAUGUAUGACACAUCUCUACAAGUGGCCAAUCUCUGCAUCACUUCUAUCACCACAAUAAUUAUACUACUCUGCCCACCAUUUUGUUUAAAGCCUGAAAGGCAAAGCAACUGCAUAAUUGUGCAAUCAUCAAACAUAGGUUUUCUAGGGAGUGGUGGUAUCUCGUGAUACGAAAUAUCAUUCGUUCAUUCGAUGGGACCUAACGGUCCAAAAUUGGUGGCACCAUGAGGUAUGAAGCCUAGCUAGUACUUAUUUGGAGAACAUGUAUAUCUUUCUAUCUCAUCUACUCCCUCCGUUUCUAAAUAUUUGAUGUGUUGACUUUUCUAAACAUGAUUGACCAUUCGUCUUAUUCAAAAAAUUUAAGUAAUUAUUAAUUUUUUUCCUAUCAUUUGAUUCAUUGUUAUAUAUAUUUUUAUGUAGACAUAUAGUUUUAUAUAUUUCACAAAAGCUUUUAAAAAAGACGAACGGUCAAACAUGUGCUAAAAAGUCAAUGGUGUCAAAUAUUUAGAAACGGAGAGAAUUUGUUUUUGUCAUCAUGCUUGAGAAUAUUUUGUCCUUCCUCUGUGAGCAUUUUUUUCAACAUCAUUUUUUUUCUAGCUCAUGUCUCAUUUUGCAUGGAUAAAUGGAGGGAGAACCAUAAGUGUAUGGAGUAAAUUCAAAAUUCAAAAUGAUAAUAAGCAGCAUAUGUACAAAGUUUAUCAAUAUGAUUGACAUAUGCUUUUGAUAGGAAUAAAAGCAUCAAUGUGAAGUGUGUAAAGUUAUACCAUUUCCUUUUCUUUUCAUAAAAUUCCCAAGGACUCAACAGAAAAGAACAAGGGUCAUAUUGUUAUGUAAUCUCUCAUUCAUCAAUUACUUAGGCCAUGUUUGUUUCAGCUUAACAUUAUUAUAAUCUAGAUUAUUGAGCUAGAUUACUAUAAGCUGGAUUAUAAUAAGCCGACAUAAAAUAAGUUGUUACAUGUUUGUUUAUCUGGAUUAUUAGUUGUUUGCUAGUUGUUAGCCAC

Sequence
(OSA-LNCN2401.2):

GCCAGCUAACUAGCUAGCUAGGAUCAUCACCACGACAGGUGCUGGCUAUGUCCAUGUUAGGAUUCAUGAAACAUAUCAUGUAAAUCAACAAGAAAUUCUCUAUUUCUUUUAAUAAAUCGGUACAAACUAUGCCCAUUCGGUUGAUACAGAGGGAAAAAAUUACAGGCCCUAGGGAAAAGGAAAAACGAUUACAAAUGUGAGGUCAUCUUGAGGAGGUGCUUUGCACCUGCCAUUGCGUAUGUCCACGCUUCUCCAUUGAUCUUUACGAAGAACCAAAUGGCUCAGGUUUCAUGGUUGUCGAAGAAAGUGAAUACAAUUUCAGUUCAAAAUUUCCCAAAUUUCGGAAACCCACUCCCCCACGCAAGUGGAGUACAACUCUCUUCCAUUUUACACCAACAAGUUGAGUACAACUCACUUAUACACUUAGCCAUUGCUCUAGUAGGGUUGGAAGAAAGUGAGAGAAAGCUCCAAAAGGAGUGCAUCAAAUGUCGGAGUUCUCUCUGGGGUUUCAUAUGAGUGCCGGAGAUGCCGACACUCUCCCUGAUCUUGUACCUUGACGAAUGCUUCUUUUAUAAGUAUUCAUAAUCUCAUUAGGUAUUUAUUUUUCUUAUUUGAGUAAAAUAUAUUCUCAUCGUUGCGGUUCAUCACUCUGCUUAGGUAGAGUACUUUAAUCUUCUAUGUGGAUCCGAGAUUAGGGUAGUAAUUAAUAGCAUUGAUGUGGUGUCUAGGCUAUAGGUUACCUUUAUUUGUUGUGUGCUCCACGGGUCGCAGAGGUAGGCGGCUAGUGAUGACAGUCAUGUCCGUCCUUCGUAAUCCUCCACGUUCGCCGGAGGCUCCUUAGCAAACCUGGGGUAAGCCGGUGCCUAAAGCAAUUGAUAGAGUUUUACCUUAAUUAAGAUAAUUAACCCAUUGGAAUCCUAUCUAUCCUCAGCCUACCAUUUAGGUGUUGUUCUUGGAUGAAUCACAUUCUUAGAUUGUACAGACACGUUCCCUGUGGAUACGAUACCCUGGAAUACUCUUAGGUAAUGGCUACAACGGUAUUUGUGCGCUUGCAUAUUAUUCUGUAGUCAUAACAAAUACCGACCCUACACUACUACACCCCGAUACUAGAUGCAGUAGCAACAAAUUUCUAUCGUUAGAUCUUAUGUGUUCAACGGCCCACAUCCAUCCAAAUGUGCACUAAAAUAAUCUAUCUUCUUCAUUGAGAAUUGCAUUUUGCAUUUAUUUUUCUUUUCAGGGGAGACUACACUUUUCAACUGCUUUUUCAGGCUUUCAGCAAAUAUAUGCCUAGUCUUCCCCCCAACUUGAUUGUGGACACCAUACAUAUGUACAUACACGUAUGUAUGACACAUCUCUACAAGUGGCCAAUCUCUGCAUCACUUCUAUCACCACAAUAAUUAUACUACUCUGCCCACCAUUUUGUUUAAAGCCUGAAAGGCAAAGCAACUGCAUAAUUGUGCAAUCAUCAAACAUAGGUUUUCUAGGGAGUGGUGGUAUCUCGUGAUACGAAAUAUCAUUCGUUCAUUCGAUGGGACCUAACGGUCCAAAAUUGGUGGCACCAUGAGCUCAUGUCUCAUUUUGCAUGGAUAAAUGGAGGGAGAACCAUAAGUGUAUGGAGUAAAUUCAAAAUUCAAAAUGAUAAUAAGCAGCAUAUGUACAAAGUUUAUCAAUAUGAUUGACAUAUGCUUUUGAUAGGAAUAAAAGCAUCAAUGUGAAGUGUGUAAAGUUAUACCAUUUCCUUUUCUUUUCAUAAAAUUCCCAAGGACUCAACAGAAAAGAACAAGGGUCAUAUUGUUAUGUAAUCUCUCAUUCAUCAAUUACUUAGGCCAUGUUUGUUUCAGCUUAACAUUAUUAUAAUCUAGAUUAUUGAGCUAGAUUACUAUAAGCUGGAUUAUAAUAAGCCGACAUAAAAUAAGUUGUUACAUGUUUGUUUAUCUGGAUUAUUAGUUGUUUGCUAGUUG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

480

LEP:

97.56%

ME_num:

11

MEP:

2.24%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.97

Avg Expression:

0.96

Tip: OSA-LNCN2401 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: OSA-LNCN2401 is not a differential expression ncRNA.