RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2397

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

15989553

End:

15992031

Strand:

+

Ref_name:

OSA-LNCN2397

Sequence
(OSA-LNCN2397.1):

CCCCCCCCCCCCCCCCGAUCCCCUCUCUCUCAGGCGGCAGCCUUCCCCUCGAGCAGCGGCGACCUCCCCCUCCGAGCAGUGGCGGCGACGGUGGUGGCGCCCUCCCCCCACCACCAUGAGUGACUAUAGCGGAGCCCUUCCCCCCUCCCCAUGAGAGACGGCGGCAACGACGCGAUGACCUCCCGCAAGCGGUGGCGGCACCCUCAGUCACGGCGAGCGGCUGCGACGGCACUCUCCCCGACUGCGAGCGGCGGCGGUUGUGGCGCCGCUCCCUCUCCCCACCGCCGGCUCCUUCUCUCGUCGUCGGGCGGUGGCCGCCACGCCACUCCUUGCCAGAUCCGGCGGGUCGACGGAUCUCCAACUGCUCGGCGACUCGGGAUCUGGCCCCUCCCUCUCCCUAUCGGCAUCCAACGCAGGGGCGGGUUGGCAGCUUGGCGGCGCGAUGGCACGGUGGAUCCCCGGCACAACGUCGGGUCAUCGGUUCAAGAUCUAGCCUUCGAGUUCGCGACCUCCACGGCAGCGAGGUGGCGAGAAGCAGCGCGCGGUUUCGUUAUGAGGAGGAGAAAAGCAUCAGCGUGUGCAUAUUCAGGGUGCUGCCUGCGAGUGUGGAACGGCAGAGCUAGGGGAGAAGCUACAAGGAGGAAAGACCGAGGAGAAGAGAUAACCUUGGCGUAAGAUGAAAAGCUAGUCCGUUUGACGUCUCGGAAGUGAAAACUGUUACAGCUGUUCACCUGGGUGUGCCUGUACAUACAAUUUGUGAUGCACGGACAUAUUCAAUAGUAGAGAAAUGAUCAUUAGUACCGUUCUAAAUUAUCCUUUGGAACGGUUAUAGUAAUCGAGACAAAAAAAAAACCAUGGUUCUAAACCCUCUUUAAUCCCGAUUGUUGUAACCAAAACUGAAGUUGUUACUAAAGGAUGUGAGACCUGAACUCAAAAUCUCUCACCUUAGAUCGUACGCGCUUACCAUCCCACUUAUUUCACACAUUUGACGGUGCGGUGGAUGAAGAUGAGGAAGGGGUGGCGUGGUGGAGGGGUGAAGGUGACCUUCAUUGCUAUCUUCAAGGUGACCUUCAUUGCUAUCUUCACA

Sequence
(OSA-LNCN2397.2):

CCCCCCCCGAUCCCCUCUCUCUCAGGCGGCAGCCUUCCCCUCGAGCAGCGGCGACCUCCCCCUCCGAGCAGUGGCGGCGACGGUGGUGGCGCCCUCCCCCCACCACCAUGAGUGACUAUAGCGGAGCCCUUCCCCCCUCCCCAUGAGAGACGGCGGCAACGACGCGAUGACCUCCCGCAAGCGGUGGCGGCACCCUCAGUCACGGCGAGCGGCUGCGACGGCACUCUCCCCGACUGCGAGCGGCGGCGGUUGUGGCGCCGCUCCCUCUCCCCACCGCCGGCUCCUUCUCUCGUCGUCGGGCGGUGGCCGCCACGCCACUCCUUGCCAGAUCCGGCGGGUCGACGGAUCUCCAACUGCUCGGCGACUCGGGAUCUGGCCCCUCCCUCUCCCUAUCGGCAUCCAACGCAGGGGCGGGUUGGCAGCUUGGCGGCGCGAUGGCACGGUGGAUCCCCGGCACAACGUCGGGUCAUCGGUUCAAGAUCUAGCCUUCGAGUUCGCGACCUCCACGGCAGCGAGGUGGCGAGAAGCAGCGCGCGGUGGCCUUCGGCUUGCCCCUCCCUCUCCUCUCGUCAUCUGUGUUUCGUUAUGAGGAGGAGAAAAGCAUCAGCGUGUGCAUAUUCAGGGUGCUGCCUGCGAGUGUGGAACGGCAGAGCUAGGGGAGAAGCUACAAGGAGGAAAGACCGAGGAGAAGAGAUAACCUUGGCGUAAGAUGAAAAGCUAGUCCGUUUGACGUCUCGGAAGUGAAAACUGUUACAGCUGUUCACCUGGGUGUGCCUGUACAUACAAUUUGUGAUGCACGGACAUAUUCAAUAGUAGAGAAAUGAUCAUUAGUACCGUUCUAAAUUAUCCUUUGGAACGGUUAUAGUAAUCGAGACAAAAAAAAAACCAUGGUUCUAAACCCUCUUUAAUCCCGAUUGUUGUAACCAAAACUGAAGUUGUUACUAAAGGAUGUGAGACCUGAACUCAAAAUCUCUCACCUUAGAUCGUACGCGCUUACCAUCCCACUUAUUUCACACAUUUGACGGUGCGGUGGAUGAAGAUGAGGAAGGGGUGGCGUGGUGGAGGGGUGAAGGUGACCUUCAUUGCUAUCUUCAAGGUGACCUUCAUUGCUAUCUUCACA

Sequence
(OSA-LNCN2397.3):

CCCCCCGAUCCCCUCUCUCUCAGGCGGCAGCCUUCCCCUCGAGCAGCGGCGACCUCCCCCUCCGAGCAGUGGCGGCGACGGUGGUGGCGCCCUCCCCCCACCACCAUGAGUGACUAUAGCGGAGCCCUUCCCCCCUCCCCAUGAGAGACGGCGGCAACGACGCGAUGACCUCCCGCAAGCGGUGGCGGCACCCUCAGUCACGGCGAGCGGCUGCGACGGCACUCUCCCCGACUGCGAGCGGCGGCGGUUGUGGCGCCGCUCCCUCUCCCCACCGCCGGCUCCUUCUCUCGUCGUCGGGCGGUGGCCGCCACGCCACUCCUUGCCAGAUCCGGCGGGUCGACGGAUCUCCAACUGCUCGGCGACUCGGGAUCUGGCCCCUCCCUCUCCCUAUCGGCAUCCAACGCAGGGGCGGGUUGGCAGCUUGGCGGCGCGAUGGCACGGUGGAUCCCCGGCACAACGUCGGGUCAUCGGUUCAAGAUCUAGCCUUCGAGUUCGCGACCUCCACGGCAGCGAGGUUUCGUUAUGAGGAGGAGAAAAGCAUCAGCGUGUGCAUAUUCAGGGUGCUGCCUGCGAGUGUGGAACGGCAGAGCUAGGGGAGAAGCUACAAGGAGGAAAGACCGAGGAGAAGAGAUAACCUUGGCGUAAGAUGAAAAGCUAGUCCGUUUGACGUCUCGGAAGUGAAAACUGUUACAGCUGUUCACCUGGGUGUGCCUGUACAUACAAUUUGUGAUGCACGGACAUAUUCAAUAGUAGAGAAAUGAUCAUUAGUACCGUUCUAAAUUAUCCUUUGGAACGGUUAUAGUAAUCGAGACAAAAAAAAAACCAUGGUUCUAAACCCUCUUUAAUCCCGAUUGUUGUAACCAAAACUGAAGUUGUUACUAAAGGAUGUGAGACCUGAACUCAAAAUCUCUCACCUUAGAUCGUACGCGCUUACCAUCCCACUUAUUUCACACAUUUGACGGUGCGGUGGAUGAAGAUGAGGAAGGGGUGGCGUGGUGGAGGGGUGAAGGUGACCUUCAUUGCUAUCUUCAAGGUGACCUUCAUUGCUAUCUUCACA

Sequence
(OSA-LNCN2397.4):

CCCGAUCCCCUCUCUCUCAGGCGGCAGCCUUCCCCUCGAGCAGCGGCGACCUCCCCCUCCGAGCAGUGGCGGCGACGGUGGUGGCGCCCUCCCCCCACCACCAUGAGUGACUAUAGCGGAGCCCUUCCCCCCUCCCCAUGAGAGACGGCGGCAACGACGCGAUGACCUCCCGCAAGCGGUGGCGGCACCCUCAGUCACGGCGAGCGGCUGCGACGGCACUCUCCCCGACUGCGAGCGGCGGCGGUUGUGGCGCCGCUCCCUCUCCCCACCGCCGGCUCCUUCUCUCGUCGUCGGGCGGUGGCCGCCACGCCACUCCUUGCCAGAUCCGGCGGGUCGACGGAUCUCCAACUGCUCGGCGACUCGGGAUCUGGCCCCUCCCUCUCCCUAUCGGCAUCCAACGCAGGGGCGGGUUGGCAGCUUGGCGGCGCGAUGGCACGGUGGAUCCCCGGCACAACGUCGGGUCAUCGGUUCAAGAUCUAGCCUUCGAGUUCGCGACCUCCACGGCAGCGAGGUGGCGAGAAGCAGCGCGCGGUGGCCUUCGGCUUGCCCCUCCCUCUCCUCUCGUCAUCUGUGUUAAUAUUUUGGAUUUUUUAUGAUUCCAAUUUAGAUUAGGACUGGGAUUUUGUUUUUAUUUGGAUUGUGAUGAUUUGAGAUUUGGAGUUAUUUGUGUGAUGAUGGAAUUCUGACUGGGAUUUUUUUUUCUUGGGGGGGGGGGACGGACGAAAAAUCACCGCACGGACGAGGUGAUGAAAGGAAAAUUACGAAUAUUUUAAUUAGUUAAGGUUUCGUUAUGAGGAGGAGAAAAGCAUCAGCGUGUGCAUAUUCAGGGUGCUGCCUGCGAGUGUGGAACGGCAGAGCUAGGGGAGAAGCUACAAGGAGGAAAGACCGAGGAGAAGAGAUAACCUUGGCGUAAGAUGAAAAGCUAGUCCGUUUGACGUCUCGGAAGUGAAAACUGUUACAGCUGUUCACCUGGGUGUGCCUGUACAUACAAUUUGUGAUGCACGGACAUAUUCAAUAGUAGAGAAAUGAUCAUUAGUACCGUUCUAAAUUAUCCUUUGGAACGGUUAUAGUAAUCGAGACAAAAAAAAAACCAUGGUUCUAAACCCUCUUUAAUCCCGAUUGUUGUAACCAAAACUGAAGUUGUUACUAAAGGAUGUGAGACCUGAACUCAAAAUCUCUCACCUUAGAUCGUACGCGCUUACCAUCCCACUUAUUUCACACAUUUGACGGUGCGGUGGAUGAAGAUGAGGAAGGGGUGGCGUGGUGGAGGGGUGAAGGUGACCUUCAUUGCUAUCUUCAAGGUGACCUUCAUUGCUAUCUUCACA

Sequence
(OSA-LNCN2397.5):

GACGGACGAAAAAUCACCGCACGGACGAGGUUUCGUUAUGAGGAGGAGAAAAGCAUCAGCGUGUGCAUAUUCAGGGUGCUGCCUGCGAGUGUGGAACGGCAGAGCUAGGGGAGAAGCUACAAGGAGGAAAGACCGAGGAGAAGAGAUAACCUUGGCGUAAGAUGAAAAGCUAGUCCGUUUGACGUCUCGGAAGUGAAAACUGUUACAGCUGUUCACCUGGGUGUGCCUGUACAUACAAUUUGUGAUGCACGGACAUAUUCAAUAGUAGAGAAAUGAUCAUUAGUACCGUUCUAAAUUAUCCUUUGGAACGGUUAUAGUAAUCGAGACAAAAAAAAAACCAUGGUUCUAAACCCUCUUUAAUCCCGAUUGUUGUAACCAAAACUGAAGUUGUUACUAAAGGAUGUGAGACCUGAACUCAAAAUCUCUCACCUUAGAUCGUACGCGCUUACCAUCCCACUUAUUUCACACAUUUGACGGUGCGGUGGAUGAAGAUGAGGAAGGGGUGGCGUGGUGGAGGGGUGAAGGUGACCUUCAUUGCUAUCUUCAAGGUGACCUUCAUUGCUAUCUUCACA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

252

LEP:

51.22%

ME_num:

160

MEP:

32.52%

HE_num:

79

HEP:

16.06%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_meristematic_zone

Tau :

0.72

Avg Expression:

7.41

Tip: OSA-LNCN2397 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated1.24195456959220.00162323237777333
2Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256-2.286567280209820.000109231795188685
3Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286-1.296726305618120.0447634755880305
4Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279-1.654444282910060.00063688936207611
5Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"-2.557124547447880.000505694023113562
6Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8-1.588401119583420.00362756152547383
7Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-1.370178227737740.00153727769370841
8Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105-1.499726478350050.00107818288339339
9Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341-2.156749748042686.92830587683052e-06
10Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331-1.826051057489990.000799468593256579
11Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342-2.160161172953574.92584603707246e-06
12Nipponbare // leaf // control--/--Nipponbare // leaf // drought1.304864530587030.0498697147621309
13Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated2.074643818720463.72971059595895e-06
14Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.715721346635030.0025601721417718
15Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day1.747843865081335.27825147213367e-05