Chr:
Chr12
Start:
15855290
End:
15855878
Strand:
.
Ref_name:
OSA-LNCN2390
Sequence
(OSA-LNCN2390.1):
UUUUUUUGCAAUUGCUUAAGAAAUCAAACAACCGACAAAUCACAAAGACUUGGCACAAAUUUUUUUUUACACAUUGCAUCCAUAAAAACAGAUCUGAAAGUCUCGUCAUAUUGGAACCAAACAAAACACCAAGCAAACACCCUAGUGAAUCCUAGACCAACCAAAAUUAACAUGGGAGAUUGACUUGCCGAAGUGCCGAACUGCCGACGGCGACGAGGACGGCAAGAUUGAACUUUUGCUCCUUGAUUUAUAACUUGUAGCGCUGUCGAUGGAGUUGCAUGCUCUUGCAUCCUGCAGCAGGGGACCUUCACCCUGCUUGUUCGUCUUCCUCACGACGACGAGACUGAGACAAGGCCACGCUUGCCACGGAGUUGGCCGACCGGCUGGAGCGGCGACGAGAGGAAGCGCGGCACCGUGAGCUCACAAACCACGCUGUUGCUGCCCCCUAGAGGCUGGUGGUGACGGCCAGGUCGUCGACGAUGCCGGCGUGAGGGCUUGGGCGACACUAUGGCGAUGUGAUACUGGACAGAAACAGCGUGCGCUGUAGAUUGGGGAAUGGGGAAAUCAAUCGAUCUAUUUGAUAUAACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.31%
ME_num:
MEP:
29.67%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.80
Avg Expression:
1.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.94306562263487 | 0.0011622147775774 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.1496133482291 | 0.00104840905035436 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.36100202476461 | 0.0104758195006729 |