RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2389

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

15735184

End:

15744176

Strand:

+

Ref_name:

OSA-LNCN2389

Sequence
(OSA-LNCN2389.1):

GUGACAAUACCCCUCGCAUAACACAAUCCACUGCAGCGCACCUUCCUGGAUCAUAAUCACCCCCUUAUAAACAAGGCAUGGACUCCCCAGCGACCCCCGUGGGCUUAUCUCCGCCACUUCUCAGUCUGGUGCCCCGCAAUGAACCAUGCUAUACAAAAGAUAAAGCCGUUGCCCAUGCUGGCUUGUGGUUGGCACGGUUAAUGUUUCACAACCGAAACUCGUGAACCGGUCCUUAAUUGUCAUGAGCACGACCAACCAAAACCAUGUACUCACAACCCACCAUUACCAGGUUUUAGUUGGCACAUUAAUUAAUUAACUAAUCACGAUUGAUCAUCGUGAACUAUCAUGAAACCAUCAUUAAAUAAUAGUGAGUCAUUAGUUAUCCCGAAUGUGUACUAAUGUUUCUAAGCAGGGCUAAGCAAUUAUAUCUAAUAUCUAGUUGAACCAAUAUAAAUAAAGCUCAACUAGUCAAAUUGUAAUAACCCAAGGUAUCAAGGAAUAAGGUAAUCAAGUACAAAAGGGCCAUAACAAAGAAUAGGUCAAUUCCACCCAAUGACAUUCGAAAAUAGAUGCAAUAGUUGAAUAGAAACAAUAGCUUUAAAUAGGAUCAACAUGCUCAAAGGGUUGUUUGGGAUCUGUGUGACUUGCCUUGCUGGCCUUGGAACUCUUCAAACUCUUCUUCUGCGAAAACGGACUCUCCGGAAACGACGGAAUCUAAGCAGAAAAGAGCAAAAUCACCAAAACAGCACAAAAACAAGCAUGAACAGUACAUGUGGAUAUUUUUAAAGUGUAAAUCUCAAUUUUAGAAAAAUUUAGAGACUUGAACCAACUAAAGCGGAGCUAAGAUGAAUUAGUUAUGAAUUUUUAAAGAUUAAAUCGGAUUAAAACACUUAUAUCGGUUAAAAUUGAAUUAUGACGCAAUAAUGAAUUAUUUUUGAAAAGGAAAAGAAGGAUUAUUGCGUCAGCGGGCUAGGGUUUGGCGGACCGGGCGCACGGGCGGCGGUUCACACGAACGGACGGCCGAGAUCGAACCAAUCCAAAACGGACGGCCGAGAUCGAACGGUCCACGACCGGCUCACGGCGGACGACCCC

Sequence
(OSA-LNCN2389.2):

UGCCCAUGCUGGCUUGUGGUUGGCACGGUUAAUGUUUCACAACCGAAACUCGUGAACCGGUCCUUAAUUGUCAUGAGCACGACCAACCAAAACCAUGUACUCACAACCCACCAUUACCAGGUUUUAGUUGGCACAUUAAUUAAUUAACUAAUCACGAUUGAUCAUCGUGAACUAUCAUGAAACCAUCAUUAAAUAAUAGUGAGUCAUUAGUUAUCCCGAAUGUGUACUAAUGUUUCUAAGCAGGGCUAAGCAAUUAUAUCUAAUAUCUAGUUGAACCAAUAUAAAUAAAGCUCAACUAGUCAAAUUGUAAUAACCCAAGGUAUCAAGGAAUAAGGUAAUCAAGUACAAAAGGGCCAUAACAAAGAAUAGGUCAAUUCCACCCAAUGACAUUCGAAAAUAGAUGCAAUAGUUGAAUAGAAACAAUAGCUUUAAAUAGGAUCAACAUGCUCAAAGGGUUGUUUGGGAUCUGUGUGACUUGCCUUGCUGGCCUUGGAACUCUUCAAACUCUUCUUCUGCGAAAACGGACUCUCCGGAAACGACGGAAUCUAAGCAGAAAAGAGCAAAAUCACCAAAACAGCACAAAAACAAGCAUGAACAGUACAUGUGGAUAUUUUUAAAGUGUAAAUCUCAAUUUUAGAAAAAUUUAGAGACUUGAACCAACUAAAGCGGAGCUAAGAUGAAUUAGUUAUGAAUUUUUAAAGAUUAAAUCGGAUUAAAACACUUAUAUCGGUUAAAAUUGAAUUAUGACGCAAUAAUGAAUUAUUUUUGAAAAGGAAAAGAAGGAUUAUUGCGUCAGCGGGCUAGGGUUUGGCGGACCGGGCGCACGGGCGGCGGUUCACACGAACGGACGGCCGAGAUCGAACCAAUCCAAAACGGACGGCCGAGAUCGAACGGUCCACGACCGGCUCACGGCGGACGACCCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

358

LEP:

72.76%

ME_num:

123

MEP:

25.0%

HE_num:

10

HEP:

2.03%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.90

Avg Expression:

2.47

Tip: OSA-LNCN2389 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"1.800568917454560.0268371247142883
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"2.124248231930360.00141689456899032