Chr:
Chr12
Start:
15469841
End:
15470862
Strand:
+
Ref_name:
OSA-LNCN2380
Sequence
(OSA-LNCN2380.1):
GUGCGCUUGCGAAAAUUAGCGUGGUAUGUGUCACUUCCCCUCACUCUCCUCUUAUCCUCUCCCCUCCCCUUCACCUCUCCCCUCUCCUCACUCUCCUCUUAUCCUGUCCCCUCCCCUUCACCUCCCCGCCAGUGGAAGGGGCGGCCGGCGGCCGGCGGCGUCUCCCCUCCCUCCCUACCCUCCAGAUCUAGCCGGAGAGGGGAGUGGGAGGCCGGCGGCCGGCGGGAAAGGGCGGACAGCGUCGGGCGAAGCGCGGAGCGGCGGCCGGGUGGCGGGGCGGCCGGCGGCGGCUCCCCUCCCUCCCUCCCCUCCAGAUCUGGCCGGAGGGGGGUGGGGGGAGGCCGGCAAACGGCGGCAAAGGGCAGAAGGCGUCGGGCGCGGGGCGGCCGGCGGCGGCUCCUCUCCCUCCCUCCUCUCCAGAUCUGGCCGGAGGGGGGUGGGGGGAAGCCGGCGGCCUGCGGCGUCGCACGCGGGACGACGCGAGGCAGCUGGCGGCGGCUCCCCUCCCUCCCUCCCUCCCAGAUCUGGCCGAAGGGGUGAGGGGGGAGGCCGGCGGCGGGGUGCAUUCGUGCGACGGCGAUGACGACUUGCGUGGGAAAAUUUGUGAUUUGAUUUGAUUUGAUUGUGAACCACUAUGAUGUAUGUUAAUCUGUGAUGUUUCUAUGUAUUUGAUUUGGUUUGAUGUUGAAUCUGGAUGGGGGAAUGUGAGGAGAAUGGGAAGCUACUGCUACCGGCCGGAAUGGCGGUGGGCGGUGGCUGCACAUUUUUUUUUAAUUCCAGGUGCUAUUUUCGUAGGCGGACCAGUUGUCCGCUUGCGAGAAUCAACUAUUUUCACAAUCAUUCGGUUGCAGGCGGUGAACUGGUCCGCCUGCAAAAAUCUGUUUAGGCCGCCUAUGAAAAGCUGUUUUCUAGUAGUGUAGCUAAGCAAGAUAAAACAAAAUUAGUCAAGAAUUAGUAAAAAAAAAGUUAAUAAUUUCAGAGCUACGAGAUUUUCAUUCCGAAGCAACGUUAGGAACGCCCCC
Sequence
(OSA-LNCN2380.2):
CUUCCCCUCACUCUCCUCUUAUCCUCUCCCCUCCCCUUCACCUCUCCCCUCUCCUCACUCUCCUCUUAUCCUGUCCCCUCCCCUUCACCUCCCCGCCAGUGGAAGGGGCGGCCGGCGGCCGGCGGCGUCUCCCCUCCCUCCCUACCCUCCAGAUCUAGCCGGAGAGGGGAGUGGGAGGCCGGCAAACGGCGGCAAAGGGCAGAAGGCGUCGGGCGCGGGGCGGCCGGCGGCGGCUCCUCUCCCUCCCUCCUCUCCAGAUCUGGCCGGAGGGGGGUGGGGGGAAGCCGGCGGCCUGCGGCGUCGCACGCGGGACGACGCGAGGCAGCUGGCGGCGGCUCCCCUCCCUCCCUCCCUCCCAGAUCUGGCCGAAGGGGUGAGGGGGGAGGCCGGCGGCGGGGUGCAUUCGUGCGACGGCGAUGACGACUUGCGUGGGAAAAUUUGUGAUUUGAUUUGAUUUGAUUGUGAACCACUAUGAUGUAUGUUAAUCUGUGAUGUUUCUAUGUAUUUGAUUUGGUUUGAUGUUGAAUCUGGAUGGGGGAAUGUGAGGAGAAUGGGAAGCUACUGCUACCGGCCGGAAUGGCGGUGGGCGGUGGCUGCACAUUUUUUUUUAAUUCCAGGUGCUAUUUUCGUAGGCGGACCAGUUGUCCGCUUGCGAGAAUCAACUAUUUUCACAAUCAUUCGGUUGCAGGCGGUGAACUGGUCCGCCUGCAAAAAUCUGUUUAGGCCGCCUAUGAAAAGCUGUUUUCUAGUAGUGUAGCUAAGCAAGAUAAAACAAAAUUAGUCAAGAAUUAGUAAAAAAAAAGUUAAUAAUUUCAGAGCUACGAGAUUUUCAUUCCGAAGCAACGUUAGGAACGCCCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
36.59%
ME_num:
MEP:
23.17%
HE_num:
HEP:
40.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.72
Avg Expression:
33.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -12.101503685686 | 1.4283588598929e-18 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.11279837686356 | 0.00128798451688513 |
| 3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.12782761687931 | 0.0111049870072926 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -10.2318016932644 | 5.45714774198815e-12 |
| 5 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 3.73979237456683 | 0.00297578863944734 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.48734509530768 | 0.0179070417992473 |