Chr:
Chr12
Start:
15283586
End:
15285047
Strand:
-
Ref_name:
OSA-LNCN2373
Sequence
(OSA-LNCN2373.1):
CGACGCUUCGAGACUCGAGAGGAUAACGUCCCAUCGCUCACUCGUCUCCUCUCGGUUUCUUUCUCUCUCUCUCUCUCGUUCUCUCCGCUCUCUCUCCCCUCUCCCCUUUUCUCUUUCUCCUCUAACGGCGAUGAGGGCGACGGUUGGAGUAGCAGCGUGCGGCGGCGGCCGCGCCCUCCCCUCCGUCAGAUCCGGGGAGGGGCGGCCGCGGAGGUGCAGGCCAGCGGUGGCAUGCAGCGGCGGUGGGGAGGGGGGAUGCGGUGGUGGCUUGGCGGUGGCGCCCUCCCCUCUCGACUCUCUCUCACUGCCCUCGGCCGGCGGCUGGCCGGUGGAGGCGGUAGCAGCGGCGGACCCCCCCCCCUCUCUGCCAGAUCCAGGGAGGUGCGGCCUAGUGGCGGGAGGCGGCAUGCUGCGGCGGAAGGGAGGGGGUUGUGGUGGCGGGACGAGAGGCGGUGGUGGCCUGGCAGCGGCGCCCUCCCUCCGUCGGAUCUGGCGGCCCGGUGGCAAUGUUCUGUGAAUGAUUUCUUUGAUCAAUGUUUAUGUGAAUGAUUUUUGUGAUUUCUCAUUGAAUGAUUUCUGUGAUUUCUCUGUGAAUGACUUCUGUGAAAUAUUUCUGUGAAUGAUUGGGGAUUGGGGAUGAGCUCGAUGCAUCGGCUCGAUUUGAGCCUUUUUUUUUUUUGGCUCGUGAGUGGUCUAAAGGUGCCGGUUUUGAAAAUGUGAUUUGUGCUGGAUCACUCAUAUGUGCCGCCUUCAUUGUGCCGGUUGGGAAAACCGGCACUGAUUAGGGUUUCCCAACCGGCACUGUUUACCCUUUCUGUAGUAGUGAAAAGUCCUCCAACUUUAUUCUUGAGCUUCUUUUUUAUAGAUACUCUGCGCCGUCAUCACCAAUCAGUAUAGUUUGGUACUUUGGUAUACAGAACAAAGAUCCAACAGUCAUCAUGACUCGGUCGUCUACCUCAAUCGUCUUAGCUGCCAUACAGGAGAGCGAGAUGGUAGCAUUCCUGCAUCAGCGAGAGGAAUCUUAAGCUGUGCUCAUUGGCUGCAUGUUGCUGCGGUGCGUCUGCCACUGGCAAUGCCAGAAACCGGCGUCUCUGAAUGGGACAGCCAGAUUGAUGGCCAACUCAUCGGCGAGAAGCAACAUGGCAACCUGUCCGCGAUCUCUGGAUUGGUUUGGAGGGAAGGUGACAUCCAUAAGAGCUCCUGAUGCUUCCCAAUCCAACCACCAUGCAAUACACAGUCACAUCUACUGUACGCUAUCUAGCGUUUCCUUUCUCUAUAGAACUCUGUUCGUUACUGUCUUUGGCAUUGUAGCAUUGGGUCUAUCACUCUAAAUAGCAGUUGAUUUGAU
Sequence
(OSA-LNCN2373.2):
CGACGCUUCGAGACUCGAGAGGAUAACGUCCCAUCGCUCACUCGUCUCCUCUCGGUUUCUUUCUCUCUCUCUCUCUCGUUCUCUCCGCUCUCUCUCCCCUCUCCCCUUUUCUCUUUCUCCUCUAACGGCGAUGAGGGCGACGGUUGGAGUAGCAGCGUGCGGCGGCGGCCGCGCCCUCCCCUCCGUCAGAUCCGGGGAGGGGCGGCCGCGGAGGUGCAGGCCAGCGGUGGCAUGCAGCGGCGGUGGGGAGGGGGGAUGCGGUGGUGGCUUGGCGGUGGCGCCCUCCCCUCUCGACUCUCUCUCACUGCCCUCGGCCGGCGGCUGGCCGGUGGAGGCGGUAGCAGCGGCGGACCCCCCCCCCUCUCUGCCAGAUCCAGGGAGGUGCGGCCUAGUGGCGGGAGGCGGCAUGCUGCGGCGGAAGGGAGGGGGUUGUGGUGGCGGGACGAGAGGCGGUGGUGGCCUGGCAGCGGCGCCCUCCCUCCGUCGGAUCUGGCGGCCCGGUGGCAAUGUUCUGUGAAUGAUUUCUUUGAUCAAUGUUUAUGUGAAUGAUUUUUGUGAUUUCUCAUUGAAUGAUUUCUGUGAUUUCUCUGUGAAUGACUUCUGUGAAAUAUUUCUGUGAAUGAUUGGGGAUUGGGGAUGAGCUCGAUGCAUCGGCUCGAUUUGAGCCUUUUUUUUUUUUGGCUCGUGAGUGGUCUAAAGGUGCCGGUUUUGAAAAUGUGAUUUGUGCUGGAUCACUCAUAUGUGCCGCCUUCAUUGUGCCGGUUGGGAAAACCGGCACUGAUUAGGGUUUCCCAACCGGCACUGUUUACCCUUUCUGUAGUAGUGAAAAGUCCUCCAACUUUAUUCUUGAGCUUCUUUUUUAUAGAUACUCUGCGCCGUCAUCACCAAUCAGUAUAGAACAAAGAUCCAACAGUCAUCAUGACUCGGUCGUCUACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
34.96%
ME_num:
MEP:
28.66%
HE_num:
HEP:
36.18%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.78
Avg Expression:
13.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.32641069097575 | 2.0756606521317e-05 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.57286008876458 | 5.9562863243064e-05 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.75931250745368 | 1.42821352129897e-05 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.89605883168056 | 0.0263118060854583 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.18628595463624 | 9.1547492007493e-06 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.05376042878047 | 8.04633415815598e-09 |