Chr:
Chr12
Start:
14636378
End:
14639377
Strand:
+
Ref_name:
OSA-LNCN2340
Sequence
(OSA-LNCN2340.1):
CGCGAAAAUCGAUUUUCGCCGGCGGGCCCCUUAAGGCCCGCGUGCAAUAAUAAAUCUAAUUUUGCAGGCGGACCUUUUUAGAGGGUGCACGCAAAAAGUAAUUUUCUCAUGCGAACAUCUUUAGAGCACCGCACGUGAAAUUACGCUCCCUCCUUUUUCCCUCUCAACACUUCAAAAAUUCCAUCCUUAUAUCCUCCCUCCAACCCUCUCACCUCUUGAUCCUUAUCCACACCCCCAACUCCAUCUCCUCUCCUCUCAUGCACUCGCGCGGCGGUAGGAGCGGCCCCCGACGGCCACCGCCGACGAGGUGGCCGGGAGUAACGCCGUUGGCCUCGCGAAUCCACGCCACCCCCGCCGACAAGAAGGAGGAGGUGGCCAGAGCGGAGGCAGACGAUGGCCAUUCCACACUCUCCCCGCAACGGCUCCUCUCCGCCGCUUGGAUCUGGCGGCGGCGCCCCUCUCCCACCCUCCCCAAAGCGACGGUGACGACGAGACGUGCUGCGGCGGUGGUGACAGCGAUGGCUACGACAACGACGAACUGCGGCAGCAACUAGGGUUUCGAUUUUUUUCGUGAUUUUUAUUUUUUUCAGAUUUUUUUUCGCGUGCGGGUGCACCACUCGCAAAGAGAAACCAGAAUUUUGCAGACACUGCCGGGCAGACGAGCGCCACUUCCGUACGUAAAAGUUGUUUUGGCCGACAUAGAAAAAUUGUUUUCGUAGUAGUGGAAUAACGUUAGACAAACUUGGUGGUCUUAGUGGUGAAAAAUGUUUGAAUAUGCUAAUUAAUCGUUUGGAUGAUGAGAGAUAUGUUGGUGCAUUUUAUUGAAAACUUCUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.98%
ME_num:
MEP:
23.17%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.97
Avg Expression:
7.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 3.69272159413034 | 0.0312775462236441 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.77722830802849 | 0.0380549014253392 |
| 3 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 3.95278987710596 | 0.00999434140289821 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.43605542617156 | 0.00968869186073086 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 6.37154048904458 | 9.55544307984906e-14 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.80923997274568 | 0.00484496783232985 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.3527686407367 | 1.05274878928397e-05 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.68553180561853 | 5.09143356596657e-07 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -3.74799035062205 | 0.00298809960102536 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.37224633575722 | 0.00400793882379063 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.29511116088413 | 5.14750630085671e-06 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.43606795092765 | 6.02053372548228e-08 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.62810295838359 | 1.77793840896749e-07 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 4.05284913071707 | 0.000157453586311228 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.24671703375332 | 0.00142512839487555 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.6105165137845 | 0.00417818057668443 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.05614144330388 | 0.0117441803925016 |