RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2315

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

14219032

End:

14221840

Strand:

+

Ref_name:

OSA-LNCN2315

Sequence
(OSA-LNCN2315.1):

GUUUUCAUUGUCUUGGCAGUGGCCGUCUCUUCUGUCCGGCUCCCUACUGCGGCUUGAAGAUCGCCUCCUCAACCGGUCCCACAGCGAGCGGCUCCUGUGGCGACUCCUGGAAUGAUUGUCUCUGUCCUUGUCUUCAUCAUCAUCUGCCGGUCCUCUUGUUGGGUCAGGCGAGGAUUUGGAGCAGAACUCGAAUCCAGCAUCGGAUUCUGCAGAUCUGGCGAGGAUACCGCAGACCGGAAAGGGCAGCCCGUCCCCGGAACCCGAUAUCUUCUGCUGACGAAAGCUGGAUCUGAAGCAGGGACGCCCAGGCUAGGAAGAGUAGGGGGCUGACGGGAAGGACCAACAGGAGGGAAGAACUCGAGGGUUGGAGAGGCUAGGGAAGCUGGUGGAUCUGGGGGUAGGGGAAGAAGCGGUGGAUUUGGAGAAGGGCGAAGCCUAUGGUGACGGGGGUGAGUGUCUGGGCUUAGAGACCUAGCCAGCGAUGCUCCAGAGAAAGGCGACAUCGCUAAAGCUGGUUGGGAAGAGAACGCCGUGGCCGGAGAGGCCGCCGACGCAAGAGCGGAGCCAGUCGCCUAGCAGUCCACCAUGGGAGCCCCCCUUUUUCCCGUGCAUCAAGGGAGAUCAAUACAGAAGAAAUUGAAGCACUCGGAUUAUUACUUUAUGUUUCAAGAGAAGGCUAUUUCGUCGACUGAAAAGGUCUCAGGGGCUACUGUGGAGAUUAUGGAUACCACAUAUCUACACGGCAUGUAUAGUCCGACUGGGUAUGGGGUGCCAUGCAUAGAUAGAAUAUCUUCGAGAAGACUCGGGUUAAGUUUUAAACUUGUAUGUCAAGGAAAUAUCCGAGAUCCUAGUCGGUUACGAUUGUAUUUUAUCUGUAACUAUAUAUUCCAUUAAGGAUAUGGACUGUAUUUUGUAAUACGGACCCCUUCCCCUAUAUAAGGAGAGGUCUGGGUGCUUCUAGGGGCACGAUUUUCUCCCAGAUCAUACGAUCAAUAAUACACUCGGCGAAUCAAUCCCCGGACAGGAGUAGGUUAUUACUUCUUGAUUAAGAAGGCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

449

LEP:

91.26%

ME_num:

24

MEP:

4.88%

HE_num:

18

HEP:

3.66%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

crown

Tau :

0.94

Avg Expression:

3.39

Tip: OSA-LNCN2315 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-9.229116721072614.37294505549514e-11
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h-10.80864863503111.40955984534196e-14
3IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)6.681215005560650.0183799522658849