Chr:
Chr12
Start:
14055032
End:
14055814
Strand:
-
Ref_name:
OSA-LNCN2307
Sequence
(OSA-LNCN2307.1):
CCUAAAAGUCCAUGCAACCAUACAUCAUUCAUAAUUGCAUGAUGCAAAAACACUGUGCUUUUUGGGAGAGCACUACAAGCAUGUGAACCAUGCAACACUGAUGUUGAUCCCUUAACAAAGCCUAUCCUUGACAAGGACAGGGUUCCAGAACCUGUUUUCAGCCAAAAAUCCACUCAAAUGAUUGAGGGGUCAACAUAAUCCAUGCAAAGCAAGAUGGUGAAAGAUUCCAAAAUUCUAUUUCUCAGUAAUGAAAAGGGAUGAGUUAAAAAGGAUUGUGCGUUAUAUAUAUUAUAUUCUAUCAUGAACAUGGUGCAUAUAUAUGCGGGUAAUCUUGGCCAUUUUUUCUUCAGGCCCCAGAAGAAUUUUGGUUGUUACAUUCUUUAGAGACCGUGGAAAGUUCAACGGUUGUAUUGUUCUUGUGGUUGGUGUGUACAGUCAACAAAGGCACUCUCCUACUGUCACAUGGACUGACAGUUUGUAGUAGUUGUUAGGGACAAGUGGAAGAACCGCAUUAGGCGAGGUACUUUUAUGCAGUUUUGAAAAACAUGGAGCAUCAAAUCGGAAAUUCCAUUGCGAUUAACCAGACAUUCAGUUUGUAAAGAUCUGCAUUGCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.97%
ME_num:
MEP:
50.81%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.84
Avg Expression:
4.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.69935640570913 | 0.0189936049908917 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.09023382045974 | 0.0184624321572563 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.77431453257145 | 0.0288424292529929 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.71447880375484 | 2.26581102853161e-05 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.19979347055009 | 0.00571579938583527 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.38755953861705 | 0.0147801027194552 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.36789695050182 | 0.0301347670615549 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.72100240684439 | 0.000370184808266525 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.95453766753063 | 0.000260873531467884 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.96043582159726 | 0.000126910555733822 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.28994482576681 | 0.00650947165751979 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.77958814965221 | 1.09877933669389e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.13066154991335 | 0.00010819440221295 |