Chr:
Chr12
Start:
13765339
End:
13766414
Strand:
+
Ref_name:
OSA-LNCN2294
Sequence
(OSA-LNCN2294.1):
GGGUGUGCCAAAAGUGAAAUACAGGUGUUUGUGUUGUGCGCGCUGGUGUGCAGCGUGGAAAUUCCUUGUGUACUGUUCAUCUUCUUCCUACGUCAGUUCAUUAUAUCUAUGUGUGUGUGUUUCAUCAAGUGAGAAAGAGAGAGGUGUGUGUGCGAGUGAGUGUUUGGGCCAACAAUUGGUAUCUGAGCUGUGGUGAGUUCCUGCUGCCAUGUCUAGCGAUGGAGUGUACACGCCGGCGCCGAUCCGUCAUGGCAGCGGCUGCGGUGGCAGUGGCGACCUAGGCGGCCAUGAGCGCGUCGUGCAACAAGUGAAGGAGGCGGGGGUGUCGCUACGUUACCCCAUGCUCGAGGGGCAGCAACAGCUGUUGGCCGCGUGUGUGGAGCCACGACUGACGCGUGCUGAGUUGGAGGCCAAGGUUCGGGUCAUGUGCAGUAAGGCUUGACGCGCGCUGAGUUCGCGCGGAGCUGGUGUCGUGUGCGUCGUGUCCUGGAUCGUGGGAUGGCACGAUGUGGCAACGGAUACGUGUGCAUACAUUUAGGAGUCCACUUCCUUUCAGUUGUAACUUUCCUUAUUUAUAGUUCAAUGCAACAAUCAGAAAAGCUGCAGCUUCGCAGCACCAAAAACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.98%
ME_num:
MEP:
35.98%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.86
Avg Expression:
3.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.69864864498145 | 8.14171818213479e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.86147693837838 | 6.26103169555372e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.31085673964989 | 0.000209832415428493 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.56308407799448 | 6.91633493486468e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.23921539479399 | 0.000779257958207782 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.60895605503525 | 3.29421795162663e-06 |