Chr:
Chr12
Start:
13656545
End:
13658780
Strand:
-
Ref_name:
OSA-LNCN2290
Sequence
(OSA-LNCN2290.1):
UUUAUGUAAAACUCCGUAUAAUAUACUGUGUAUCACACUAAUAUACACAUGCAUCCUAUUGUUAUUUUAUUAUUUUCCUUGAUGUAAAAGGGCAAAGAGAAUUAUGCAGAGACGUUCUACCAACUCCUCACACGUUGCAAUUCCUACUUGUCAUUGGCAUGGUGGAGUAGCCAUCGCACUUGCACCUGGCCGGAUCCAGCAUGGCCGCUAGACCUGACGGCCCAUGAGCUCCGUGCGGUUAGAUAGGGGUGGUCCCUGAGCUCCAAAUGGCCACCACGCCGGGAGAGAAGAUGGGAGUCGCCACCGCUACUCCCGUACGGGCUUGUCACUUCUUCCACAAAAUGGUUCGCAGCGGAAAUAGUGAACCUUGUGGAAGGAGUAGCGAGCCUUGUACGGAGCCACCAGCAUUAAUAUAAGGUUCCGUGAUAGCGGACAAUGAGGAAAAAAGGAUGAUGCAUGCAUGCAACACUGAAGAAAGAUCAGAUAGGCACGAUGACGCGGCGACACAUCCCAUCACACAUAAAAAACAUACGCUGACAGGUAUAUAAAAACAUCUACUAACAGAUAAUAUAAAAAACUAUAAAAAAUAUUGCAACUAGUAGUCCCUCCGUCCCAUAAUAUAAGAGAUUUUGAGUUUUUAUUUGUAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.66%
ME_num:
MEP:
18.7%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.89
Avg Expression:
2.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 5.45789223116629 | 4.82928192360309e-08 |
| 2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 5.00766264291697 | 0.000752540258010946 |
| 3 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 5.91904525598187 | 3.48377304457289e-06 |