Chr:
Chr12
Start:
13585381
End:
13586887
Strand:
.
Ref_name:
OSA-LNCN2289
Sequence
(OSA-LNCN2289.1):
GUGGUGGGCCCUGCCGAGCAUAGUCAACUACUAUUAGGUAUGUGGUAUCCAUAACUAUGAUACAUUUCAUAUUAUUGACCUUUUCUUUACCAAACUUGUAUUAAGUUUGAUCAAGUUUUUAUCUCUUCUCAACAAUUAUAAAAAUUGAAGAUGUUUUUGCCAGUAUUUUGGUACGUCAUAUCAGUGUUUCAGUCGGUUUUAAUUUCGUUUGUUUUUGGAAAUAUAUAUUCGUGUUUGUGUUUAAGUUGGAUUUUAAGUUCGUUUGUUUUUGGAAAUACAAAAGGAGUCGUAUAAGAAUUUUUUUUAUUAAAAAACUUGCAUACUAACUUGAGAUAAAAAUUGGAUUCCUAUUUGCAGCUCGUGAUUAUAUAAAAACAAAAUAACCAAACGAAUUCACAUAGUAAAUUUCACCCUAGCUAAACCGUCUAACAAUGAUAAGAUUAAAAGAGCAUCCACCUAUUGCAACGCACGGGUAUCUUUUUAAGUAAAAAUCUUAACUAAUAUAAAGAAUUGUAUUUUUCCGAUCGUCACAUGCAUCCUUCAUUGCGUUUUCGUCCGUCAUUACGGACUAUUUUUUCCUCAUCCGAUUCAUCGUGCACCUCCUCUCCAAAUCCCACAUCAUUACAAUCCAAUCCUACCAAAAAACAAAAUCUCAACCUCAAUUUAAAUACAAAUCGGAAUCAUCCAAAAUAUCAAGAGAUGAUCAGAGAUGGAGGGGUGAGCGGGAGCAACAACAACAUCAUCACAUGAAAACCCCAAAAUAAUCACAACAACAACAUCAUCAACACAUGAAAAAACAAUACAAACAACACAUACACAAUCAACAACAUCGGCCGAUCCAACCAAGGGGACGUCGGCGGCGGAAGGCAUAUCCCCUCGGCCGGAUCCGCCCGCGGGUGCCGCCGACGUCGUCGUCGCCGCCGGAUCAAAGGGAGAAGCCGCCGCCGCCGCCCAAUCCAAGGGAGAAGCUUGGGGUGGAUGGGGAGGGGGUAGAGGACCACUACAUCCGACCACCGGAAACGCCGCUGCCACCACCUCCGCCGGAUCUGCCCGACAGAUCGCCGAUGCCACCGCCGCCGUCGCAGGAGAAGCUUGGGCGCGGGGCUGAUGAGAAGGGGUAGAGAACCGCCGGAUCCGUUCGCCGAAAAAGUCUCCGACGGAUCCGUCCGCUGGAAACACCGCUGCCGACGGAUCCGCCCGCUGGAAACACCGCUGCCGCCACCUCCACCGGAUUCGCCAACGUGAGCCGCUGAUGCCACCGCCACCGCCGGAUCGGACCCGCGGGAACGGCUGACGCCAUCGCCGCCGACUCCUUUGCUGCCGGCAUGGGAGAAACAAGAGAAGCGGGGGCGAGGGGAGGAGAGGGAGUGACCAAGAGGGAGAGAGAGGGACGGAGACGAGAGAAGCGAGAGUGGGGACGAGAGGGAGAGAGAAGGACGGGUGAGAGGAGGGGGACGGUGGAUAAGGAUGCGUGACCCGCCUUAUCCACUUGCGCACCGGCUCUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.59%
ME_num:
MEP:
12.8%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.90
Avg Expression:
2.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.21303786617513 | 0.0023063068664808 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.48699165326179 | 0.000683139391082024 |
| 3 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | 5.24994667266467 | 0.00099526020962365 |