Chr:
Chr12
Start:
13405507
End:
13406118
Strand:
.
Ref_name:
OSA-LNCN2283
Sequence
(OSA-LNCN2283.1):
CGUUGCAUUUCCUUGUUUUUAACGGAAGCGAGAAAUGCGUAAUUAAUAUAUAGAUGUGAUGAUUCCAUGAAUCUCUGAAAAGGUAGGGGUCAAGGACCUUAUGGGACUGCAAUCGUGCCUGCCAAUUGGGGAAGGACGUGGGCCUGGCAACUGCUCGGCUCUAGUAAGGGAAACAGGUAUGUCUCACAUCAUUGCUCGAAGACUGGAAAAACUGCAAGUUAGCUCAGUUGGUUUAAAACGGCAUAUGUGAGUGACGCGAACUAGCAUUUUGAAUUGAGAAAGCCGGUAGCCGGGGUGUUCGCCCUUGGUCUACGCGGAUCAGGGGCCCAGCUAACGCGUGAAACACUCCGCCUGGGGAGUACGGUCGCAAGACCGAAACUCAAAGGAAUUGACGGGGGCCUGCAAUACUGGACAUUUGGUGAAGGCCGGAUGGGGAUAGCGCUCACCUGAUACUUGGACUCGAAGGGGAGCAGGUCGUGUCUCAAUAUCUUCAGGAGAGGGGAGGGCGUCGCGUAGGCAUAGUUCCAAUGGUAAGCUGAUUCCAGGUACGCCCGUUCCUCUACAUCGUUUGACUAUCAAAGUCAGGUCAAAUGUAGGUGAGUGUUGCGACUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
45.73%
ME_num:
MEP:
35.98%
HE_num:
HEP:
18.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.93
Avg Expression:
64.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.74237471091067 | 0.0430702314349987 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.172377131005 | 0.01555984681906 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -6.09557616326323 | 0.0152817573911039 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.320087245785 | 0.0128409896070594 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.38588375721278 | 0.0113412897076422 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.47239557768394 | 0.0271476066061558 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.21788886455181 | 0.00117041858546187 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.14728785698285 | 0.0045586578052285 |