Chr:
Chr12
Start:
13402381
End:
13402665
Strand:
.
Ref_name:
OSA-LNCN2282
Sequence
(OSA-LNCN2282.1):
GCUGUUACGCCAGAAAUCCAAGGUUCCACACGAGCUCCUGUUCUGCGGCGUGGUGGCAGGACCGCUAGGGGAUUGGCUCCGGGUGUAGGUAGGGUCAAAUCCGCAGGGGUCAUGCAAAUACAUAGGCCCCUUCCCUUCUGCCGAGUUGUUUAGAAGGCGCUUUCCGUUCUACGGUCCCUCGGAGCGAAGGGUUAGGCAGGUAGUACGGGCCCUCUGACUUCCAGCUAUGCGCUGUGUGCGACUCCCGCGAAGCGAAUGAAGGGAAGCUCUUCGAGCUUUCUCCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.71%
ME_num:
MEP:
5.49%
HE_num:
HEP:
12.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.94
Avg Expression:
47.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.48522106632996 | 0.0326232576400794 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.80709838112434 | 0.0315791186478599 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.46984412300666 | 0.0316748569281414 |