Chr:
Chr12
Start:
12986918
End:
12989890
Strand:
+
Ref_name:
OSA-LNCN2276
Sequence
(OSA-LNCN2276.1):
UCCUAGAGCUUGGUCUCCCUUUCUCUCCUCAUGACCGGCCACCACUACCCACUGGCCGAUCUCCUCCCCCGUAGCCUCUCUUCCAAUUCCCUUGCGCCAUCGGGCUUGCCUCGCCGAGCGGAAACGUGCUAACAAGGAGAUCAGAAGGAAGCGAGAUUCUACGGCAACGACAAGUUUGUCUAGGCUAGUCUACACUCGAGCUUUUGCCUGUGGAGUUCUUUGAAUUCUUUGGACUUUAUUAGCUGUAGUUUUAGUAGUUGAAGAGUUUAGGAGUUUAAUAGUUUAGCACUUUGAAUUUUCUUGUAUUUCAAAUAAGGAUGUAUUAGUUUGUAUUUUUUCACCCUUUAACAGUUGUAUAAUUAGUCUAUAUAAACAAAUUUGUGUAAACAAUCGAAAGUUGUUCAGUAUAUCAAUCUGUGUGUGAUCGAAAUCCUGGACGAUCACGAGUGGAUUUUCGGGGCACCAAGCCUAAAUAUGGUGUCCCCACAAUAGCCACCCCCUUUUAGUAUUGCCGAAAUCUUGUUUUGACAGUUG
Sequence
(OSA-LNCN2276.2):
GAGCUUGGUCUCCCUUUCUCUCCUCAUGACCGGCCACCACUACCCACUGGCCGAUCUCCUCCCCCGUAGCCUCUCUUCCAAUUCCCUUGCGCCAUCGGGCUUGCCUCGCCGAGGUGAACUCAUUUUUCCAGUUUCUCCUCUCUUUCCCCAUCCGAAACCAACCACCACAGCCACCUUCUUUUGUUGCCGGAGCUGUGCUCUUGUUGCCGCCGUUCCGGUCAUCCUCCUCUCUCCCUCUGCCUUCCUCCACCCUCCCCGGGUGCGUGAUGCUCCGGAACACGCUUAGACGCCGCCGUCGAGGCCGUUCAACCACCGGAGCACCGGCGCCCUACUCCCUCCCUCUCCUCUGUGCCCGGCUGGAAGGAGAAGAGAAGAAGAAGAACGGGAGGAAGAAGAAGAGACAUAUGACAACGGAAACGUGCUAACAAGGAGAUCAGAAGGAAGCGAGAUUCUACGGCAACGACAAGUUUGUCUAGGCUAGUCUACACUCGAGCUUUUGCCUGUGGAGUUCUUUGAAUUCUUUGGACUUUAUUAGCUGUAGUUUUAGUAGUUGAAGAGUUUAGGAGUUUAAUAGUUUAGCACUUUGAAUUUUCUUGUAUUUCAAAUAAGGAUGUAUUAGUUUGUAUUUUUUCACCCUUUAACAGUUGUAUAAUUAGUCUAUAUAAACAAAUUUGUGUAAACAAUCGAAAGUUGUUCAGUAUAUCAAUCUGUGUGUGAUCGAAAUCCUGGACGAUCACGAGUGGAUUUUCGGGGCACCAAGCCUAAAUAUGGUGUCCCCACAAUAGCCACCCCCUUUUAGUAUUGCCGAAAUCUUGUUUUGACAGUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.27%
ME_num:
MEP:
17.28%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.93
Avg Expression:
5.22
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.70825000796022 | 0.000179489562752049 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 8.02916133228323 | 1.6805554180207e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 5.23677182023184 | 0.00123558424265806 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.457912002217 | 0.000132666989307729 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 9.46239679268533 | 5.23878671409231e-10 |
| 6 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -4.47797956827633 | 0.00166047652805936 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 7.44873994209839 | 2.18083887961778e-08 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.0822318324674 | 8.7127367906341e-06 |
| 9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 7.28375983738847 | 0.00588388585841897 |
| 10 | 9311 // leaf // control--/--9311 // leaf // salt | 3.49132899672745 | 2.88121668960253e-08 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.08538185573929 | 0.0185470222037253 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.79261287479264 | 5.62568986679045e-06 |