Chr:
Chr12
Start:
12231150
End:
12232751
Strand:
.
Ref_name:
OSA-LNCN2259
Sequence
(OSA-LNCN2259.1):
UGGACCCCAUCCGAAAGCUUAGAAAGUAUAAUUGCAAGUAUGGUUGCAUAUCUGAUCUGUUUCCCAAAGUAGUUAACAGAUGACACGGUCAAAUCAGCUCCACCUAGCUGGCACAACAACCUAGCCCAAGGCAUGGUUGAAGGCCCGUUUGUGUUCUAAACUUGUAAUUGAUGGACCAGCCUACAGGCCCAAGAGCCACCAAUUUGGCUUGACCCAUCUUCUCAUCCAACCAGGGACGUGGAUCCUUAUCCACUGCACACGACGUUGCCAGGAGUUGGAGCCACGCUUUUGCCGCGAGUGGACGUGGCCCGCGCAACUGCCGUGCCGCCCCCACGCCUCCGCGCAAUGCUCCGCCUUCUGAAAUUGUGUCGCCGUCAGAGAGCGAAAAACUGCUUCUCCCGAAAAUCGUGCUGCCUCCCCGCCUUGCGUCGUUCCCACCGUGCUGUCUCUUUUGCGUACCACGCCGCUUCCUCCGGAAGUCGCUGGGACAGUCGAGGUUGUCACUUCCGCUGAGGACGGCGACGACGCCGCCGUUGCCAGGGCGAGCAGCGAUGUUGUGGGUCUCCUAGGAGCGGCCUUGUCCGCAGCGGAAUAUCCCACCGUCGUGCACUGGAGGAUGACGUCGCAGGGGGAACGUACUGCUUCCUUCUCCUUCGGCUGUAGCUGGGAGCUCACCCUCCGUCCCGACUUGCUCCUAAUGUGCCUUUUCAGGGGUGGACCUAGGGUGUGUGCUGGUUGGCACCGGCAUACCUUUUUUUUUUUUAAGAAAAACACUAGGAUGUAGUAUGCAAUCAAAAGGAUAUAAAAAUGAAAUCCUCUCAAAAAAUAGAAUAUAACAAUGAGCACGAUUUGUCUUAAUCUUGUAAUCGUCAAGAAAUCAAAUAAGAGGAAGAGGAAAGGACUAGAUGAAGAGAAAAGGUGGGGGGGGGGGAAAGAAGAACAGCUAAAUAGAUUAGGUUAUGGAAUUGAUUGUUAUGAAUUUUAUAGAUUUUUCAUGAAUUAUGGACCACAUUUGAAUAUUAUAUUGAAAAAUCCGACCAAAAUUUGCCAAAAUUCUUCCAUCAGAAAUAGGUGUUUUCUUUUGAAAAAAUAUAUAUAUAGUGAAGUGAUCGUUAGAAUGGGCACACCCAGUGUAAUUUUUCUGGGUCCGCCACUAUGCCUUUUGAAGACACGCCGAGGUCGUCACAAGGAUGGUGGUCGACGGUGUUGCGUGAUGGCCUCCAAUGGUGACAGUUGUGCUAGAUGCGCCACUGCCGUCUCCUUCCUCAAGUAGACGAUCUCCAGCAGCGAGGGAAGAGAUGAGGGUGUCACGGGUAGGGAGCCCAUGACCACCUUUUGCUCGGUGUGGCUCUCUUCCUUCCCGUUUGGCGCUUUCUCUGCCUUUCUUGAGGCUACUAGUAUCACUAGAUCAGCCUGCAUCCUUUUGAGGACCCGGAUGCAGGUGUCUCCAGGAUCUUCGAUCAUGUCUUCACUAGCCAUGGCUCUGAUACCAAGUUGUUAUGGGUUAGUGUUCAUAGGGGGUAAACACCGCCGGGAGGAUAGCCGGGCGGCGACGGCUGCUAGGGAUGAGAGGGGAACUUAGGUUGGGAAAGACUAAUUCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.89%
ME_num:
MEP:
4.88%
HE_num:
HEP:
2.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.95
Avg Expression:
3.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 7.11384746487383 | 0.0242691179752903 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.88303392194691 | 0.0301576197482433 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.95750714718557 | 0.00644240670711347 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 5.35522563924359 | 3.85706014802931e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.13682278826087 | 0.00418146491977943 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.26948633527563 | 0.00225574670020376 |