Chr:
Chr12
Start:
12191568
End:
12191892
Strand:
.
Ref_name:
OSA-LNCN2258
Sequence
(OSA-LNCN2258.1):
UAAAAUUACAAUAUAAUUACAACACUUCACGAGGAAAAUCCAUGCAAGAUCACUGAUUUCACUCAACACAACAAUCCAACUAUAUUUCCUUUUUAUUUGAUGUAAAAAAAGUAUAGAAUCCAAGAUAAUCAUAUGAUAUGGAGUCAUGUAAAUUCUGCACCAGGAGACCGCAUACUUCUCACACAACAGAAGAAGCAUACAGGUAAUUGCUUUUAUCCGUUACAACUUUUGCUAGUCAAAUAAACAUGAAAAUAGAAUGGGGGAUCGAUCCCUGGGUCUCCAGGUUGAGCACUCGCCUCGGUGGCCAACUGGGCUACAAUGCAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
44.51%
ME_num:
MEP:
45.73%
HE_num:
HEP:
9.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.83
Avg Expression:
6.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.67601776499713 | 0.0461214916822764 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.17602296255887 | 0.000285790178103409 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 1.69640448175952 | 0.0310767935486237 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.43823698291977 | 0.031858254462077 |