Chr:
Chr12
Start:
12089950
End:
12090850
Strand:
-
Ref_name:
OSA-LNCN2257
Sequence
(OSA-LNCN2257.1):
CGGAGAGCGUGAUCUAUAGGCGAUUCGGACGGGUGAUGGGUGGCGACUCCGGUGUCCAUCGUUGAUUCGGCGUCCACGGCGAGUCUGGAGGUGACGACAUGAUGCAUCGGCGUGGCGUCUUCUGCUCUGCCGUCGUCGCAGGAUCUCACGACAACACCAUCAAAGCGGCGGGACAUCCAUGGCAUCGCUUCGUUCCAGCAAAGGCGACGACGAGACCUCACUCCUCCCCAACACCAGAUUAGAGAAGCCCAUCCAGGCGGUGGCUAAAGUGAUUACGGCUCCCACCGAUCGUCUCGAUCUCGAUUAUGAUGAAUCAAGCAAGGCAACGGCCAUGGCAACGAUGCCGGCCGGCUGCUGCGACCAGAUCGAUCUCCUCCUGGGUGCCGGGCGAGCUCUGUUUUGAGUGUUGAUAUCUGAAUCGGAAAUCUACAAUCAGAUGAGUUUAUUCAUUCCCCCCUAAUCUAUGUACAUAAAUUAUUCCCAAAGUUUAGACUAAAAAUUCCUGAUUUUGUUUCUUCGCUCAUAGAAAACAUUCGAUAUAGUAGGAAUGUUUUGUUCUGAAAUGCAUUCUUUAUUUCCUCGAAUGAUUAAGCCCCUAAUUUCUUUGUUGCAUGCAUGCAGUUGGUUGUGGCCGGCCGCAGAGCGGUAGCAUACGUCGACUCAACACACAACCCAACGGCAAGGGGAAAGAUCCUUAGAUCCACUGUUUAGAAGCGAAUAAUGUACAUUCUUUUUCAAUUGGCGCAUACUUUCGUAUUUUGUUCUUCAUAUCCUCACGUCAGUGAGGAUAGUUCUCCUUUUUGAAAAUAAACAUUGCUUUUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.7%
ME_num:
MEP:
4.88%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.97
Avg Expression:
4.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.14588675749719 | 0.00271323506674694 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -6.0924391615878 | 4.41863903197507e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.28153509269759 | 0.00032616678382066 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.23378660958721 | 0.00157497234481982 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.48519773164515 | 0.000438411700227373 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.80902588326261 | 0.00669799631496432 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.65826526692102 | 0.0137396486603475 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.35299932259444 | 1.48163992491008e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.13681727023439 | 0.00371461607749409 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.05533602419967 | 3.43460829876766e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.53316045745429 | 6.93927746608524e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.94543693219218 | 9.71502563499295e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.67359692183321 | 2.60260400115901e-06 |