Chr:
Chr12
Start:
11322507
End:
11324313
Strand:
-
Ref_name:
OSA-LNCN2244
Sequence
(OSA-LNCN2244.1):
UGAAGGAGGAUGAGAAUCAAACUCGUAUCCGAACUUAAGGAGUUUUGGACCCAUAAACCCAAUUAAACACCUCCAAAUGGGCCAAACAUUCAUACCAAUGAAAUGAGGGGCCCAAAAUGAAUGUCCAGGACGAAAACCGGAGCGAACGGAGUCGUCCCGGGUUCAGCCGAACCCCUGAGUUCGGCCGAACCCUGGUAGAGGCCGUUCGCCCCGGCCCAAGUCCAGUUUGGUAGAUAACUGCUUCCCAAUGAUGGUUAUGACCGUUUCCGGCGCUCCAACCGUCAUCCAAAUGGACACUUGGCAUGAGGAGAGUGAAUAUGCUCAUUGGAUGCCAUGGAGGAUCUCCACACUCCCAAGCAAGCUCCACACUAUAAAUACCCCUCUCCUCUCCCUCAUUUGACACACACCAAGAUGUAGAGCUCAAUUACAAGAGGCUCUAAAUAUGCUUUAGCUUCUUUACAUGUUCUAUAGUAUACUUAGAAUAGGGAGAGAGUGAAGUAGAAGAAGUCGGAGGAAUCCCGGAGUUAUCGGUAAUGCUCUCUUUAUUCUUGUACUUUGGUAAUUACUCUGCUUCAAUAGAAAUAUCAUUCUAAGUAAUUAAGAUUUGCUUAGUGAGAAUUAUUCUUGGUUAGUUCCUAAUUAGCAUACGGGAUCAUUGUUCACUAUAGUCCAUUAAUUAUAUAGUGUUUGCUUUAGUGCUUGGCUAGUGCUAGAGUAGUAAUUAAUUGCGUAGACGCGGUGUCUGGGUAAUUAAUUGCCAGUGGUUGCUGCGUAUCCCACAGUACGUUAGAGCAAUCAAUAACUACUGUAGUGUUUGUAACUCACUAAAGCAAUCACUAUAUUUUAACGGAUUAUAGUGAACAGUGAUCUCAUACGCUAAUUAGGAACUAGCCAAUAAUAGUUCUCACUAAACAAAUCUUAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.59%
ME_num:
MEP:
33.13%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.83
Avg Expression:
2.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.69854395067313 | 1.22993822326593e-11 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.36108352058059 | 6.25055289277096e-10 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.74470074097541 | 0.00182853796141856 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.86231475260324 | 6.15474156264875e-06 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.14727389886325 | 0.0396307876573713 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.78677382063815 | 0.000232188437200716 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.47120391244855 | 3.49171009719038e-15 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -2.00939374440326 | 7.32333275876778e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.46101806303139 | 4.64272566139414e-05 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -4.29411202079578 | 1.93243987585745e-05 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.71066030896686 | 3.8377127991796e-05 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -4.29414036914756 | 1.98407081584574e-05 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -4.29431042542769 | 1.94242934533695e-05 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.40243887349622 | 6.46023216015162e-12 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.3238412369659 | 0.0107153412727693 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -6.79781294491853 | 2.76923257281658e-07 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.24571108258627 | 3.33512920610485e-23 |
| 18 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.75841763002898 | 1.10584646640945e-06 |