RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2225

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

10435480

End:

10456549

Strand:

-

Ref_name:

OSA-LNCN2225

Sequence
(OSA-LNCN2225.1):

ACAGCGGCGGCCCCUGUGAGAGUAGGGGAAGCGGGCUCCAACGCUUCUCCCCCAUACUGCCGUUGACAGCCCCUUCCCACUCUUUACUGCUGCUGUCACCUCUCCCUCCUCUAGAUCGACGGACAACCGGCCUUUAGCCAAUGAGGUCGCGGCAACGACACCAGCUCCACCCGAGGCCGCCCCUUCCAUGUGGCUGGAUUCUUACGCCGGCGGCAGGAGGCGGAGGCGGGGAUGGCGGCUGUGCGAGGCGGAGGCGGCGGCGGUGGCGGCGCGAGGAAGAGGCGGGGCGGCGGCGAGGGGCGGAGACGGAGGUGGGAGCGCGACGCAGGGACGGUGGCGAGGGGCCGCGGUGUGAGGCGGAGGCGGGGACGGCGGCGCGAGGGGUGGCCAAGGCGGCGGCGGAAGAGAGGGAGAGGGAGCGGGCAGAGGGAGAGGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

119

LEP:

24.19%

ME_num:

262

MEP:

53.25%

HE_num:

110

HEP:

22.36%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.94

Avg Expression:

60.23

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.335770782626590.0133598776785537