RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2214

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

9864416

End:

9865721

Strand:

.

Ref_name:

OSA-LNCN2214

Sequence
(OSA-LNCN2214.1):

AAAAAAAUUCGCACAUAAACAAAUCACUGCGCGCCCAUACAGGCAUACCCUUAUCCACCCACCACCGCAUAAUAAAAAUAUCUCCACUUCUCCCUCUCCAGAUCCAGAUCCACUUCCUCUCCUCCAAAUCCCUGCACCCUCCUCUCCUCCUCCCCUCCAGAUCCACAUCCUCUCCUCCUCCCAGGCGGCGACGGCGGGGUUCUCGGGUGGUGGCGGCGGCUCCGGCAGCUGUGUGUGGUGGCGAAGGCAACGGGAGGUGGGCGCACAGCUGCGACGGGAGGCGGUCGUCGGGGGGGUGCGGCGACGGCAACAGGAGGAGCCAUCGAGGGGCUCGACGGCAACGGGACGCGCAGCGACUGCGACGGGAGGUGGGGGCAUGGCGACGACGAUGGGAGGAGCCGUCGGGGGGCUCGACGGCGACAGGGGGCGCGGCGAGCUCCUCCUCCUCCUCGUCCUCCCCCUCCCACGUGGCUUGGUGCUGCAACGGUCGCGGCGACGACUCAUUGCUGCGGGGCGCGACGAGCUCCUCCCCCUCCCCCUCCCACGGGUGUGGCGACGGCUCGGUGCUGCGGGGCGUGACGGCUUGGUGCUUGCUGCUCGGUCGGUGAGACGACGACCUGGUCAGCGACGGCUUGGUGCUUGCUGCGGGGCUUGCUCGAUUUUUUUGUCAGUUUUUUUUUUCAUGUUCUAAAUGUUUGUAAGCCCGUGUUCACUCGUAUGAUUAUUGAAAGGUGAAUACCCAAUAUGAUCCUUAAACUUUUGCUUAAGGAUCAAUCUAGUCCCUGACAUUUCGUAUUGUGCAAACAAGUACCUUGAGUUUACUGUGUGAUUCAAUAUAGUCUUUUGACCCUCUAAACAUGCCAUGUGUACAUGCCACAUCAUCUAUGCAUGCAAAUUAAAUAUUUAAAUGUCCUUUACACCCUUAUCUGUUCAUACGAAAUAAUGAAAAACUAUUGAGAAAACACACAAAAAAAAGCUUUUGACCAUUGGCAAAAAAAGCUUUUGACCAUUGGCAAAAAUAUGUAGCAUUGAUAGAUAAAAAUAAUUGACAUUUUUCUUUGUUUUAUGAUUGCUUCUUCUUGUUUUUCUUUUCUUUAUUUGAUAGAAAAUUAAAGGUUAAAAUGGACAUUUAAAUGUUAUCUUAUAUGCACAAAUGACGUGGCAUAUCCACGUGGCGUUUUAAGUUGGUCUAAGGACUAUAUUAAGCCGCAUGAUAAUCUUUAGGUCUUGUUUGGAUAUUAUAAAACAUGAAGGACUAAUUCGACCCCUGAGCAAAAGUUGAAGGACUGAAUUGGCUAUUCACCCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

379

LEP:

77.03%

ME_num:

65

MEP:

13.21%

HE_num:

47

HEP:

9.55%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.97

Avg Expression:

29.23

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"-4.509265019582450.0135656731397551
2IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)-1.161856790236990.00124683107246788
3Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae5.979164509504938.30496985043825e-05