Chr:
Chr12
Start:
7980140
End:
7984199
Strand:
+
Ref_name:
OSA-LNCN2166
Sequence
(OSA-LNCN2166.1):
GGUCUCGCCGACCCUCGGCCUCCCCUCCUCCUGUGCCGCACGCCGCCAAAUCGUCGUCGUUGUCCUCGCCCGAGGGACACCGCCGCCUCCUCGCCUCCCUCCGUCGACCGCCUCUCCCCGCCGUCGACUGCUUGCGUGUAGAAUCCGUCGUUUCGGAAGUUCGCGGUCACGAGGAUAAGAGUUCAGAAGAUCCAAGUGAAGAAGCAAGGGCUAAAUUUCUGGGCGUGACACGACGUCGGCAGGAUCAGGAGCCUCGAGCGCAUGUGUGCCUCCUCCUCCUGUGUCAUGUGGGGAAUUUUGUUUCACAAACGCUGUGAAGGAAUUGGACACCGAAGAAUGGUCGCAUGGGAGGAAGUUCAGGUGCGCAAAGUCGUAGCUGAUUAGGGUUUCGUUUUCUAUUCAUAUUUUUAGAGACAAAGUUGUUAAAUGAGUUUGUUAGUCUAAGUCUUAUAAAAGCUGUAAUCAGGAUGGUUCGGAUCAACAAGAGAAAUUAAUCUAAAUCUUCCUGCUAUAUUCUAAUCCUUCUUCCCCAUCGGUGUGCUCUUCCCCAGCGCACUUCUUUCUUUUUGUUCGUCUAAUUGCCAACAUGCCUCGACCGUCGAGGCGAUUGAGGCGUUGGUGUUGACGACCAAAUUUGGUAGUACCAUGGGUUGGAUUCAAAAUUGGAGACCAAGCCGAUUCGGAAAAAGCCCGUUCGGGAAAUCUGAGUACACGUCGGCUAUGAACAGCAUCGGCUACCACACAAAUUGGCUACAGUGGUAUCGGCUACCACAUAUCGGCUAAACACCGGAUCAAACAAAGUCAAAGCCGGCGCCACCAAUCUCAAGAAAGGUGGCCCCAUAACCGUCGUCGGGUUGGAUGAAGACCUCCAUCGUUAUUGCCACACAAGGAUAGGAGUCCUGAAAAGGGCAAUUGUAUCUAUUAAUUAGGACAUUUUCUAGUUUUCCUUAGAGAUAGUUUGGUAAUGGUCCACCUGAAGGACUCAUUUGUAUUUUGAAUUAUGUUAGAGAUAAGAGUCGUGUCCAGCAAGGACCUGUCAUGUACUUCGGGUAUAAAUAUGGCCCGACCCCAUGUAAUCAAGGGACGACAGUUCAAUACACUUCGGCGCAUCGCCACCCUUUUUACCCUUAUUUUUGAUGACUUUUUUGCUUUCGAGUUGGGCUGCAUCAGGUUCGAUCUUCGACGAAGAGGUAAAUCUUGUCAUGGCGGCUUGCGUUCUCGGGAUUAGUGCUUACAUCUUCAUAACACUCUAAUCUUGUCGACGCAAGUCGCUGAGUUAUCAUAUAUAUCGCAUGAUAUAGAUCGAUCUCAUCAUCUGAGCUUCAUCAGCUAACCUCUAUCAUCGAAAGCGGCCGAUAGGCUUAGGCUUUGAUAUUAAGCUAGAUUAUGUGGUAUAUCUACCAUCUCGAACAAGCUCUCAUCGGUUUUAUUAGAUCUUUCAUUUCUCUUCACGCUUAAUGCUACAUCGGUUAGGUUCGAUCUAUUAAGCACUGUCCUGAAAUGUUUUAUCUAAUCUUUUCUUUGACUGCUAAUAGAGAUAGUAUCGGAGUUUCAGCCGAUCUUACCUGAUUUAGUUGUUUUACUUCCUCAUUUGGCUCUAGAUUGUCUAAAUCCGCCCCUUAUAUCAAGAUCCCAUCCUUUUGAAGUAUAUUAAGCUAGUCCAUCAUGCUUUCUAGUUUGGCCUUAGCUUCAUAUAUUUCAUCCACGUUGGUAUCUUGGUAUAGGGUGGUAUCGGAGUACUAGCCGAUACAUGUUAGGUUUGCUCUAUCGGCUAUGCUGUUAGCAUGCAUAAUCCCUACUUUUGGGCACAUUUGGAUACAGAGUGAUUUAUACUGUCUCGGUGUGGCCACCGAUCUAUCCUAAUCACUCGAUCCAAGCAUGUCCUAUCGGACGGAUUAUGUAUCGCUAACAUCUACAGCCGAUCGGGUACACCGAACAAUCUCCAAGUUUUUAUCUGCCCUUGCCGAUCUAACUCAAGUUACAUUGGCAUGGCCUCGGACGAUAUGUCAUCGGCAAUCUUGCCGAUUGGCUAUCGUCGAUGGGUUUAACUAUUUGUUGUUUUCUAUCUUGUUGGUUGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
41.87%
ME_num:
MEP:
57.11%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.70
Avg Expression:
3.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.27252662293524 | 4.13796719706549e-06 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.11680231141915 | 0.0476453559570901 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.3559989504497 | 7.31335253865597e-07 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.23838110760115 | 0.0357228019239347 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.49747363442257 | 0.000184213001679028 |
| 6 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.34623297527587 | 0.000157859776974638 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.26236773572527 | 0.0285125570831532 |
| 8 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.34633249858611 | 0.000164920562401717 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.34641882970849 | 0.000158746174958041 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.40391130962988 | 0.00274991804068194 |
| 11 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.18005397435206 | 0.0230868371568028 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.19833144995508 | 0.00592991156706826 |