RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2163

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

7709156

End:

7711045

Strand:

+

Ref_name:

OSA-LNCN2163

Sequence
(OSA-LNCN2163.1):

AUUUGGUAUCCUCACUUUGAAUUGUUUUCAUUGUCCCCUCCUCUCCUCUCCCAUCGCGUCGUCCUCCCCGGGCGACUCGAGAGACGACGCUGCCGCCGCCCCCUUCCUCUUCAACGCCUCCUCCCUCACCUCGCCGCCGCCUGAGCGGGCGCUGGCAAAGCCGUGCGCUCGCAAGGACGGUGGCGGCGGGGCCUUGUCUCACCUCCCCUUUGCGCCCAACGGCUGGGGACGCCGCUUAGAGUGGUGGUGGCGGUGCCCAGAUCCGCGCCGUGGCCGGCCGGAUCUGGGGGAGCGAUAGCCGGUGGCAGGGAAUGAAGGUGGCGGUGAUGGACGACGUGGCGGCGCGGGAGUUGGAAACGGCGGUUGGUGGUGACUGCGGCUGCCGACGGCGGCAGUGACGGCGGCGGUUGGUGGCGAGGCGGCGGCUGCUAUGGUGACUGUAGUGGCGGCUGCUGAGGCAGCGGCUGCUGUGAGGCGGCUGGCGAGCUGUGGCGGUGGCCGGAUGGCUGCUGUGGUGGCAGCUGGCGAGGCAACGGCAGCGGUGGUGGCGGCGGUGUCUGGCGGCAGCGACGGCGGCGGCGGCUAGUGACGGUGGCGGAUGUGGCGAUGGGGAAGGCAUUGGGCGACGACAAAGUAGGAGGAGUCCAGAGGGGUGAGAACGCGGUGUCGAUGACCGGAAAUGGACGAUGAUGGCUGUGAAAGGACGAUGGUGGCGGCAACGGUGGUGGAAGGAGGCAUGGCGGCCUCGAACGGCUAGUCGUGGGCAUGGCAGACGGCUGCAUCUGGUCGGCGCAGCAGCGUUUGGAGGAGGGGUCGGAGAUCGGCUUGGCAUAGAGAGGCGCAACUGAUGGCAGCGGAGGCCGGCUCGGCGCGAGAGGCGCGGGCGGUGGAGAUGGAGGCCGGCUUGGCACGAGAGACACGGCCGAUGGAGGGAGGCUGGAUUGGCGCGAGGCGCGUCCGGUGGAGGAGGCCGGCUUGGUGCGAGAGGCGCGACUGGCGGUGGAGGAGGCGUCCUCGGUGCGAGGAGGAGCUGCCGGUGGAUGUGGCGUAGUCUUCGGCGCACGAAGGCUGGCCGGCUGGGGGCGCCGGUACAGUGGUCCCACUUGGCGGCUGAGGUUGAGUGGUGGUGGAGCAUCAGUGCGUCAGCCGUGGAUUCGUAGGUGGUGAGCAACAGGUGAAAACCCAGCCCGGCCUUGGCCGGACCGACAACGAUGGUUAAUUCUCCCUCCUGAGGGCGUUGUCGUGCUGUCUCAUCCCUCAAGGGUGGUUGCCGGGCGAAAGCCAGUCUUGGCUUCUUUGAGCCCCGACGGACGGUGACGGCGGUUUUCUAUCGCUUCUCUUCUUGAAGACGUCGUUUUGGCAUCCCCUAGCCGAAGCCUCUCGAUCGAUUGGUGCAAGCACACUCUAGGAGUUGGCUUUGCGUUGGUUGUGAGGGUGUUCUUUUAGGUGAUCUCGUCUGCGUUCCUUUGUCGGUCUAGCGGUGAUCAGUCAUGCUUAGCGGCGGCCGGUCCGGUGUUAGCCUUCUCCCGGUCUUGUGUGUUGGCGCUGUCAGUGUGUGGGUGGUGGUAUAUUUUUUCCUUUUUCCUGGUUAUGACCCUCCAGGGUUAUAGUCCUGUAAUAUUUUCCUGCUCUAUCAAUCGUAUUGUCUCGUGCGAGUCGUUAAAAAAAAUAUUUUCACUGUACUAGAACAACUGAGUUGGGACAUAUUAAGGUUGAGUUCUUUUUAGCAACUAGAAGCAACUUUCUUAUUCUCCG

Sequence
(OSA-LNCN2163.2):

AUGGGGAAGGCAUUGGGCGACGACAAAGUAGGAGGAGUCCAGAGGGGUGAGAACGCGGUGUCGAUGACCGGAAAUGGACGAUGAUGGCUGUGAAAGGACGAUGGUGGCGGCAACGGUGGUGGAAGGAGGCAUGGCGGCCUCGAACGGCUAGUCGUGGGCAUGGCAGACGGCUGCAUCUGGUCGGCGCAGCAGCGUUUGGAGGAGGGGUCGGAGAUCGGCUUGGCAUAGAGAGGCGCAACUGAUGGCAGCGGAGGCCGGCUUGGCACGAGAGACACGGCCGAUGGAGGGAGGCUGGAUUGGCGCGAGGCGCGUCCGGUGGAGGAGGCCGGCUUGGUGCGAGAGGCGCGACUGGCGGUGGAGGAGGCGUCCUCGGUGCGAGGAGGAGCUGCCGGUGGAUGUGGCGUAGUCUUCGGCGCACGAAGGCUGGCCGGCUGGGGGCGCCGGUACAGUGGUCCCACUUGGCGGCUGAGGUUGAGUGGUGGUGGAGCAUCAGUGCGUCAGCCGUGGAUUCGUAGGUGGUGAGCAACAGGUGAAAACCCAGCCCGGCCUUGGCCGGACCGACAACGAUGGUUAAUUCUCCCUCCUGAGGGCGUUGUCGUGCUGUCUCAUCCCUCAAGGGUGGUUGCCGGGCGAAAGCCAGUCUUGGCUUCUUUGAGCCCCGACGGACGGUGACGGCGGUUUUCUAUCGCUUCUCUUCUUGAAGACGUCGUUUUGGCAUCCCCUAGCCGAAGCCUCUCGAUCGAUUGGUGCAAGCACACUCUAGGAGUUGGCUUUGCGUUGGUUGUGAGGGUGUUCUUUUAGGUGAUCUCGUCUGCGUUCCUUUGUCGGUCUAGCGGUGAUCAGUCAUGCUUAGCGGCGGCCGGUCCGGUGUUAGCCUUCUCCCGGUCUUGUGUGUUGGCGCUGUCAGUGUGUGGGUGGUGGUAUAUUUUUUCCUUUUUCCUGGUUAUGACCCUCCAGGGUUAUAGUCCUGUAAUAUUUUCCUGCUCUAUCAAUCGUAUUGUCUCGUGCGAGUCGUUAAAAAAAAUAUUUUCACUGUACUAGAACAACUGAGUUGGGACAUAUUAAGGUUGAGUUCUUUUUAGCAACUAGAAGCAACUUUCUUAUUCUCCG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

159

LEP:

32.32%

ME_num:

20

MEP:

4.07%

HE_num:

312

HEP:

63.41%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.75

Avg Expression:

364.90

Tip: OSA-LNCN2163 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.02418162007920.00100997815945651
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.246872280237811.37492242236685e-17
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.176522796981363.70898987548444e-13
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.151250956267339.58393333207563e-12
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.007111068634610.0127890708594906
6Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"-1.333329907175353.85116656201101e-06
7Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"-1.218404294718872.2690520603981e-08
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-2.113152055269483.63622854905398e-07
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.470749298097462.59729539023159e-07
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.597742327962383.84162258955403e-08
11Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-1.31784627336120.00262142448836912
12Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-1.190087470929050.00308714127083194
13Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day-1.809478366963740.00200920072850156
14Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA1.182291871229240.00021473265435058