Chr:
Chr12
Start:
7666787
End:
7668080
Strand:
-
Ref_name:
OSA-LNCN2162
Sequence
(OSA-LNCN2162.1):
GCCGUCGCAUGAUCAAUGCUGUUAACGAGGGAAGGUGCCAUUUUGUUGCUUGAGAUGCCAUAAAAACAUCUCACACACCACACCCGCAGCAUAGCAGCAGUGAUCCUCCCACGCUUAGCGCUAACAGAGAUUAAUGUUAAGCUAAUAGAGAUAGUGUUAGCACGCUGUUUUUUUUUUUUGCAAAUUUUUAAUGUACUUUAGAAUUCAAAUCUUUCACAUCAAAUUUCAAAACAUUCUAUUAAAAACUUUCAACUAGAAUUUGGAACUCAAAGUUUAAAACUUUCAUAUCAAAAUUUAAAACUCUCAACUCAAAAAUUCAAAUCUUGCUUGAAAGUUUUCAAAUCUAAGCUGAAAGUUUAAAUCUUGAUUUGAAAGUUUUCAAAUAUGAAUGAGAAAAUCCCCUAUAUAUCCUCGAGAAUUCGUUCAAUCCCUUAUGUGCCCCUGAAUUUUGCCUUAUUCCCUAUAUACCCCUGAGUUUUUAUUUUGAUCUCUUCUAUGUCUAUUCCGUUAGUUGACUGUUAAAUGUUUUUGAAAUUGACUAUAUUAUCCCCUCUCUUAUAUUUAUGUGCUAGUUUAAUCAUAAAAACACAAUUCUUAUAUAAAAGAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
61.79%
ME_num:
MEP:
31.5%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.91
Avg Expression:
6.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.66994370348966 | 3.45045438597292e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.55189518790119 | 3.97769677566198e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.46661438898891 | 6.70780948893804e-15 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.38596883575687 | 0.0262085825945203 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.36144347945063 | 1.48609956197308e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.60731828612183 | 9.49820404415008e-15 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.49713802738879 | 4.26488456338903e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.68649211825973 | 2.20435197063396e-08 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | 1.85026117249127 | 0.0172112011624851 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.5753542508553 | 1.09690244754283e-15 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.96321203718244 | 1.72464450209886e-11 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.12404907093816 | 5.75785707185423e-11 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.51641064760854 | 0.00710121448313889 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.92047084495798 | 9.57396497318474e-12 |