Chr:
Chr12
Start:
6890922
End:
6895501
Strand:
-
Ref_name:
OSA-LNCN2145
Sequence
(OSA-LNCN2145.1):
AUCGAGAUUUUUAUAAGGAGUGCUGUUGUUGCACUUUGUAAAUACAGAGAGAAGCAAUAAAGUUGUCAUCUACUUUGAGCGUUCUUCGAUUUGUGUUUCUUUGGGUUCAGGCGGCAGCAAGGUGGUUCAACCGACGGCGUGUGAGCGGUCUGACCGGCAGCGACAGGACAGGACUACGUCGAGAUUUCCAUCGAUUUGAGGUGGAGGUUGAUAGCGGAAUUAAUAAUUUAUUGAUUUGAAUGAGAAAAAUAAGUCCCAAGAAUUGAAAAAUGUGUUGAUGCCUAAGAGAGAUCAUGACACCUAAAGAUAUCAAGGAUGACAAAGUAAAGGUAUCGAAGAUGUGGGGUACGAAGUGGCUACUAUGCAAGAUGGUGAAGGGCAAACGAUGCUCAACCGCGAUGAAUCAUGCGAUGGUGAAGGGUAAGCAAGGGGCUUGGCGAUGAAGGAGCAAAUCCGGUGGAGAAGUGCGAGUGACGGCUUUUUCGUGAUGGACCAUGUGAGUCCAAUUUGAAGCUACAAGGAGCCCACAUCAAUUAUUUGAAGAAUAUAUGGUGAAACAGUUUCGACAUCGGUAUCCCUUAAGACAAAGAAAGGAAGAUGGCAUGAAGGCACUUCUAUUGGUAUAAUUCUCCUUUGGAUACACACAAUACUCCUCUAGUAGUUAUGCAAGGUCCAAUCACUAGAACUCGCACCCGACAAUUGAAUUUACAGGGAUUAGCCUUCUUGGCAAGGGACAAUUGGGUUUUGGCACGAUUGAUAAUCAGAGGAGACGUGGUAUUGCAAUUGCAUGUUUCGGAUUGUGUGUGUCAAAUUUCCGCCAAAUCAAUAGUUAUCUUCACCUGACGGAAGAUCAGGCAUCCGUUGCCACUGUGUGGAGUCAAUGUUUAUAGGACUCCACUUAUCAAGUUUGAAAUUUAGAUGCCUACAAUAUUACCCAAACGAACAUGAAUAUACACUGAACAAGAAAGGGGCAAUUGCAAAUUUACCACUACUUUGAGUCAUUAUUACAAGACUGCCACUAGAAAAUUGCAAAAAUGCCACUAGAACUGUCAUUCGAGUGGCAUCCUUGCAAAAUUGAAAAAAACGGUGGGAAAUUUGCAAAUGCUCAAGAAAGAAAACUUACUAAGAUCAACGAUUUAAACAUUGGCCUUUGUCUCUUUAGCGUGUGGGAAGGAAACGCACUUCCAUGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.32%
ME_num:
MEP:
36.38%
HE_num:
HEP:
6.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.86
Avg Expression:
4.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.05057772948382 | 1.38528971296199e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.46523792250718 | 0.00110632827137659 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -8.77581088244952 | 1.46340534593395e-09 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.02524425750479 | 0.000973231447668051 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -8.68038524694334 | 1.01217600472906e-10 |