Chr:
Chr12
Start:
6951335
End:
6952120
Strand:
.
Ref_name:
OSA-LNCN2144
Sequence
(OSA-LNCN2144.1):
GUGCAUACACAAAGAACCAAGUAGCCUGGUGGUGGAGGAGUUUACCAACUCCCACGUGGUCGUGGGUUCGAAUCCCACCCACGCCAUAUUUUCGCUCAUUUUCCCCCACCAGCACCAUGCACGCGCGUACAACCACGUCCAGGCCGGUUCAAAGCGGUUUUAUACCCCGGUUUAAUAGCGCUUUUUAAGCAAAACCGGGCGGUCUAACCGGUUCAUAGCCGGGUCUAUUGUGUCUAUUGCACGCCGGUCUUUUACCUGGACCGGACCGAUGGGGGCUCUGGUUCCGGUUUUUUCCGGUCCGACCGUCGGUCCGGUCCGGUCCUAAUAACUAUGGCGGAGGGGCGGCGUCGGCUCGGCAGCGGCGGCCACCACACCUCCCUCCGCCCACCGGCUUCGCUGCUCUGUGCGCCGGCGCUCCCUUCCUCCGUGCGUCGCCGCCGACGGCGCUCCCUCCCUUCCCGCAGAACACCGCCUCCGCCAGAUCCGUCGCCUGGUUGCCUCGCCUCCGCCGGAUCCACCCUACUGCCGUCACCCCUCCUCGUCGUCGAGCCGCCGCCGCUCCUCCGCCUCGCCGAACCACCGCCGCCGACCCUCCUCUUCGUCGAGCCACCGCCAUCCCUCCCAUGCCGCCGCCGCCGCCGUCCUCCGCCUUGUCGAGCCGCCGCCACUCCUCCUCCUUGUCGAGCCGCCGCUACCAUCUUUCCCAUUUCCGGCGAGAAAGAGGAGUAGGAGACAAGCUCCGGUGAGAGAGAUGAGAGGGAGAGGAUAAGAGAAUGUGUACAAGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.33%
ME_num:
MEP:
9.96%
HE_num:
HEP:
6.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.93
Avg Expression:
7.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.22167555897603 | 2.47857970291916e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.7047053117986 | 5.04011144707157e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.71100934024417 | 1.27067581102245e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.89809801384168 | 2.65954012290943e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.29261777651902 | 2.46666904422266e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.66679706759327 | 4.40469658876592e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.33283362597963 | 2.31325645572235e-10 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.19162072548597 | 7.58195137677794e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.4990737098291 | 4.54332930104014e-10 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.30805676825569 | 1.12108651417502e-25 |