Chr:
Chr12
Start:
6689292
End:
6692920
Strand:
+
Ref_name:
OSA-LNCN2136
Sequence
(OSA-LNCN2136.1):
GUGCAAUACAGACACUCACAACGCACGCGCACUCACCCCUAUGAACGCACGCACGCAAACCCUACCCCUAUGAGCAUCUUCGAAGAUUGAGCCAGCAAAUCCUUGAGAUUGACGAAGUCACCACAGGUGCCUCGCUAUCGACGGAUACGUCACCUACCACUGAAAGCACAACGCUAUUAAAUCCUAGAAAAUUCGCUCCCAUGCGGAGUCGAACCCAGGGCCUCAGGUGCUACUGAAGCUCUUGUAACCACUAGUCUACAUGUCUUUUCGCAAGGACAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
68.09%
ME_num:
MEP:
31.71%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.82
Avg Expression:
2.50
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.1590678096608 | 0.0486471905371332 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.70408642627111 | 0.0099400023747653 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.99148191127367 | 0.00418541996321916 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.76302913582031 | 0.0139465084897929 |
| 5 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.57057016008503 | 0.000265867431323756 |
| 6 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.30388136507334 | 7.36917317008003e-05 |