Chr:
Chr12
Start:
6344504
End:
6347192
Strand:
-
Ref_name:
OSA-LNCN2131
Sequence
(OSA-LNCN2131.1):
GUGAGCCGUUGGAUCUAAAAGAAAAAAUGGGCUGGGGAUGCGUAGUACAUCAAGCUGGGCUGGGCCGAAGAUCGGUAGCCUACCAUGCCCUCGCGGUCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGUUUGCCGGCGGGAGAUUUGAAGCCGGGUGUCAUCCGGAACCUGCCCACCUUUUCCCGCCUGCUAAUCAACAAAUGGCCUCCUGUGUUCCGCCAACGAUUUUCUUAUCCAUUCAGGUGCUUCAGGACACACUGCACAGCGGACUUAGGGGUGAGGGAGGGCGCCGGCUAGCCACAGAAAUCAUGUGAAUCAGGGCUGACAGUGGGAAUAUCCUGCAGGCAGGCUGCAGCUUGCAGCAGCAGAAUUGCUUAGGAGAGCGAUACAGUUUAGUCGGUACACACAGGGGUAGAUUGGUGUAAGAUAGCUUUCUGAAUUCUGAAGCCCUCUACUUGAUGGAAAUAGUCAUUAUCUAAAUGUUGGAAACUUUGAAUGGUUCUAAAGUGUAUUUGAGAAGUUGGAUGAUAUAUUUCUGAAACUAGUAUCUUUGGAUAUCACUAAACCAUCUUUUCCUCUAACAAUAAACAACUAAACAUAUUAGGCUGGGCAGGGAACAGAUCACUUAACACCCAUGUCACUAUCUGUUAUGAG
Sequence
(OSA-LNCN2131.2):
GUGAGCCGUUGGAUCUAAAAGAAAAAAUGGGCUGGGGAUGCGUAGUACAUCAAGCUGGGCUGGGCCGAAGAUCGGUAGCCUACCAUGCCCUCGCGGUCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGUUUGCCGGCGGGAGAUUUGAAGCCGGGUGUCAUCCGGAACCUGCCCACCUUUUCCCGCCUGCUAAUCAACAAAUGGCCUCCUGUGUUCCGCCAACGAUUUUCUUAUCCAUUCAGUCUGCGCCACUGAUCUAUUUCGCCCGCCAACUGUUCGACGAAAUGGCAAAGCCAAAGAGCUGAAAAGUUCGACAAUAUGUCUGAAAAGUUGAUGUCAGUUGUUUCUUCCCUGAGACGGCCAAGAUCUGGCGUAGGAUAACUGAAGGCUGUUCCCUGAAGUUUUCUAUGGAUGUUUGUUUUCUACCAAGAGAUGUUCUUUGAGCUGCUUUUAGAGGUGCUUUUGCUUAGUUUCGUUUUGUCUCCUGUUGUCUGUAAUCUUUUGGGGUCUCAAACCUUGUGUUAGUCUGUUUCGUUCCCCAGUAUGGGUGUUGUCCUUAAACUGUAAAUGGGUAUCCCAAUAACCUGCCGCUUUUGGCUUUCUAUAAAAGCCGGGCCCGAGUGCCUAAGUUCUAAAAAACAAAGCCAAAGAGCUACAGUAAUCCUUCAUAGGUAACCUCCUAGAUGAAC
Sequence
(OSA-LNCN2131.3):
GUGAGCCGUUGGAUCUAAAAGAAAAAAUGGGCUGGGGAUGCGUAGUACAUCAAGCUGGGCUGGGCCGAAGAUCGGUAGCCUACCAUGCCCUCGCGGUCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGUUUGCCGGCGGGAGAUUUGAAGCCGGGUGUCAUCCGGAACCUGCCCACCUUUUCCCGCCUGCUAAUCAACAAAUGGCCUCCUGUGUUCCGCCAACGAUUUUCUUAUCCAUUCAGAAGUUCGCCAAUACCAAACCUGCGAUCGUACAAGUGAAUGUAAUGCAGUCUGCGCCACUGAUCUAUUUCGCCCGCCAACUGUUCGACGAAAUGGCAAAGCCAAAGAGCUGAAAAGUUCGACAAUAUGUCUGAAAAGUUGAUGUCAGUUGUUUCUUCCCUGAGACGGCCAAGAUCUGGCGUAGGAUAACUGAAGGCUGUUCCCUGAAGUUUUCUAUGGAUGUUUGUUUUCUACCAAGAGAUGUUCUUUGAGCUGCUUUUAGAGGUGCUUUUGCUUAGUUUCGUUUUGUCUCCUGUUGUCUGUAAUCUUUUGGGGUCUCAAACCUUGUGUUAGUCUGUUUCGUUCCCCAGUAUGGGUGUUGUCCUUAAACUGUAAAUGGGUAUCCCAAUAACCUGCCGCUUUUGGCUUUCUAUAAAAGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
69.51%
ME_num:
MEP:
28.05%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.87
Avg Expression:
5.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -5.31311954106661 | 0.0258805228011182 |
2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.05627948257172 | 0.00786078544210651 |