RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2129

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

6137838

End:

6138825

Strand:

+

Ref_name:

OSA-LNCN2129

Sequence
(OSA-LNCN2129.1):

AAAAAUUCACCUGGCCCGUUAAUGACAAAACGGGCCUGCAACUAUCACUGAUCGCCGAGCUCACCGGGUCCCCUGGCGGCCUGGCCACCGUGGUGCGCAGCGAGCAGCUUUUGUGGUAUGACGCGCGCCGUCGCCGCCCAGUCGAGCGGCGGCGGUGGACGCGGGGGGGAAGGACUCGUCGCCGGCCAGUCAGCAGGAGACAGGAGGUGAAUGGGACAUCUUGUUGCUAGCUAGAGGCACCCUGUUCGACGUUUUGCCUAGGAGAGCCGGCGGAGUUGGAUCCAGCGUUUUCGCAUGAUUACCAUCCUGUGAUGAUGUGCAAUGACACUCUAUGGGGGUAUCUGAGCACAAAAAUUUGGAACUGGGAAGAACUCAAUGUGCAGUUCACCCGAAGCACAGGAUUAGAAUAAUCGACAGUUCACAUUUCUGUUUGGUUUUCUGUACAUGUUCUCAAUGAUUCAUAUUGUGAAGCUCACAAAAUUAAAAUACUCAAUCAUACAUAUAUCGUAGAUGCAGACAACUUGCCCCAACACAUUACAAGAACCAAGUGGAGGAGCUACUACCUGGCAAGUACGAACUCAUUUUACUAGAUACAGUGGUGCCUGAAUUAUUGCUCAGAUCAGAGUGUUCAUAGCUUCAAUUACAAAAAUUUGCCUG

Sequence
(OSA-LNCN2129.2):

ACCGUGGUGCGCAGCGAGCAGCUUUUGUGGUAUGACGCGCGCCGUCGCCGCCCAGUCGAGCGGCGGCGGUGGACGCGGGGGGGAAGGACUCGUCGCCGGCCAGUCAGCAGGAGACAGGAGGUGAAUGGGACAUCUUGUUGCUAGCUAGAGGCACCCUGUUCGACGUUUUGCCUAGGAGAGCCGGCGGAGUUGGAUCCAGCGUUUUCGCAUGAUUACCAUCCUGUGAUGAUGUGCAAUGACACUCUAUGGGGGUAUCUGAGACAACUUGCCCCAACACAUUACAAGAACCAAGUGGAGGAGCUACUACCUGGCAAGUACGAACUCAUUUUACUAGAUACAGUGGUGCCUGAAUUAUUGCUCAGAUCAGAGUGUUCAUAGCUUCAAUUACAAAAAUUUGCCUG

Sequence
(OSA-LNCN2129.3):

CAUCUUGUUGCUAGCUAGAGGUGGGUGGGCAGGGGAUCGAGGUCGAUCGAUUGUGCCCAGAAUAUGCUGUGGUGUAUCACCCAUUUUGACAUGCUUCGGCUGUGCAGGCACCCUGUUCGACGUUUUGCCUAGGAGAGCCGGCGGAGUUGGAUCCAGCGUUUUCGCAUGAUUACCAUCCUGUGAUGAUGUGCAAUGACACUCUAUGGGGGUAUCUGAGCAGCACAAAAAUUUGGAACUGGGAAGAACUCAAUGUGCAGUUCACCCGAAGCACAGGAUUAGAAUAAUCGACAGUUCACAUUUCUGUUUGGUUUUCUGUACAUGUUCUCAAUGAUUCAUAUUGUGAAGCUCACAAAAUUAAAAUACUCAAUCAUACAUAUAUCGUAGAUGCAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

361

LEP:

73.37%

ME_num:

129

MEP:

26.22%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.75

Avg Expression:

1.41

Tip: OSA-LNCN2129 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated4.936197929463750.00244653137581044
2Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated4.77970976991680.00792156157865458
3Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-3.163869792682840.0319947743301759
4Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-3.796864158299950.0454909427026983