Chr:
Chr12
Start:
5874864
End:
5876101
Strand:
+
Ref_name:
OSA-LNCN2127
Sequence
(OSA-LNCN2127.1):
GGUUGGUACGACAUCGUUUGUGGUGUAGCGAUUGCACGACGUUCUGAACUUGUUCUGGUUGGUAGCCACAUCGCAAACGUCACACUCGAUCUGAUAGUUAUCCCCUCACCGGAAAAUCGGGCCACAAGAGAGAGCAUCAUCAGUUGGUAUCAGAGCACCUAAAUUAGCUCAUGCUCAACUGGACCAAGAUCGACAACAAUAUUCAAGAAGGGGAGUGUUGUGCACCAUUAGAUUCAAUGGUCAAGUCUCGCUAUCAUUUUAGGACUUGUUCAUUAAGUGAGUAAGAAACUAAGGACGGUUUCCAGACAAGAAGGAGAGGAUGAUGUGACCAUCAAGUAUAUGCAUAUAAUCAAGCAUGAAAAGUAUACAACAUUGCCAAAGAAUGCAUCAAACGAAUGGAGGAUCUACAAGAUAUUAAAGUCCAGUGAGUUUUGGAAUCCAGUUCGGCCUUCGGAGACAGCACUGAUCUUGGAUUUGAUGGAAAGCUUACCUCAUUGCCCUUCAAACGCAUCCGACCUCAUAUACCACUUCAAACGCAACUAUUUAUUUAUGCUUAAUCACCUAUUCACAUUAUUUAGAUUGCAUUUUAUAUUGUUCUUGCAAUGUUCUCUUGUUUGCUUUACAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.73%
ME_num:
MEP:
3.86%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.29
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -6.39938208094062 | 0.0295500341079309 |
| 2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 4.6909205641549 | 0.011814671439889 |