Chr:
Chr12
Start:
6211177
End:
6211940
Strand:
.
Ref_name:
OSA-LNCN2124
Sequence
(OSA-LNCN2124.1):
CGCAAUUGAAACAGCCAAAAACCGUAGGCUCGAUCGACCGGCUCGUCCUUCUAGCUUAAUUAGCUACCUAUGGCCGGAAGGGCGGCGCCGUUGAGGAGCUCCGGCGCCGGCGGCCGGCAGCUGGUGGUGCUCAUCCUUCUCCUGCUCAUUCUGUUCCUAUUCACGGCGCCCAUCGUCAUGGUAUUCGGAGAGGACCCAUCGGUGAACGGCAAGUGCAACAUCCGAUGGCGAAUAGCAUGCCCGCCGCCGGUUCCUCGACCUUGAGAGAUGAUCGCGAUCACCUGCGAAGUGUGACCUAACAAUAGGCUCCUGUCCGCAAUGCAUAUGUAAUUGCAAUGAUAGAAUAUAUACUCCCUCCAUUUCAAAAUAUUUGACACCGUUGACUUUUACGUGUUUGACCAUUCGUCUUAUUCAAAAAAAUAAAUUUAAGUAAUUAUUUAUUUUUUUCAUAUCAUUUGAUUCAUUGUUAAAUAUACUUUCACGUACACAUAUAGUUUUACAUAUUUCACAAAUUAUUUUAAUAAGACGAACGGUCAAAUAUGUACUAAAAAGUUAACUGUGUCAAACAUUUUAAAAUGGAGGGAGUAUAUAUAUACAUGUACAUGUUUGUGUGAAAAGCUGAAGUAAACAGGAAGUGAUACUCUAGCUAGCUAUCACUCCUGUGAUGGCCGGCCGGCAUGAUGGCAUUCUCCAAAAGUAAUGAGCUGGCCAGUGGAAGCCAUACGUACUAAUCGUAAUUCUGUUUACCAAAUAAUUGAAAUAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
88.82%
ME_num:
MEP:
10.16%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
1.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.31154885668339 | 0.0342705872077915 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.24966204679997 | 5.44791361343244e-05 |
| 3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 4.71861189384126 | 0.000328436333065563 |
| 4 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 4.48210672594273 | 0.0370393094721584 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 6.47675019724266 | 7.09880865073997e-06 |