Chr:
Chr12
Start:
5793587
End:
5794152
Strand:
.
Ref_name:
OSA-LNCN2122
Sequence
(OSA-LNCN2122.1):
AAGUAAUUUCACCUCAACCUUAAACUUUACUAAACGAUCUAAAUCUCUUGUAUUUGUACUUAUAUGGACAUAGAGAGUAUAUGCCUUCGUUGAGUGAACUACAACUCGCAAACCAAUAUUGUAAUAAUGAAAAACAUGUGAUGGAUAGUUUGUGUACGUAAACCGAUACUAUAAUAAACUGCUACUAGUUGCGAGUAUUUCUGAUAAUUUCUAGCUGGCAAUGUGCGGUAUGCCGGUAUAUACUACUGGAGCAACUUGGCAUAAUAUAAUUAAAGCAAAUUGCACGCACGAUUAUUUGUUUAUGUUAAGUUUUCGUAGCUUCUUAUGUUUGCUAUAGUAUAUUGUAAUCGCUGACCAUGACCUUGAAAAGGUGUAAGAUUAAAAUACUAGCCAAAUGUUUGCUAGAUUGCCUGUAUCUAUCUAAGAUGGUCAAAUCCGUACUAGUUGCAUCGCAAUUUUUUUUUAUAUGCAGGCAGGUCCAAAUGCGACGACGCCGACGAGCAUAAUGCCAUGAGCAUAUGGGAGCAGGUUUGGGCAUCCGACGGGUGAUAUUUAGAUGAGAGCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.59%
ME_num:
MEP:
12.8%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.90
Avg Expression:
1.60
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 2.92113806637548 | 0.0048694541123003 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 2.50611065046275 | 0.0216154845587519 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.12379770794296 | 0.000164928071607929 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.62401327273481 | 0.00647336901526476 |