Chr:
Chr12
Start:
5384764
End:
5391946
Strand:
+
Ref_name:
OSA-LNCN2115
Sequence
(OSA-LNCN2115.1):
GCGAGAUCGACGGUAUAUUUCUGUAAAAAAAUUUACAUUCCGACUAUUCUAAAAAUAUAAUUGGAUGAACAGUGUAUUUUUAAAUUUAAUUCCUCGUCUUUGUAUCCUACUCCCUCCGUCCCAUAAAAAAUAAAUAUAGGACUGGAUGUAAUAUAUUCUAGUACGAUAAAUUUGAUAAUGUAUAUCUAGAUUCAUAGUACUAAGAUGUGUCACAUUCAACACUAGGUUGGUUUUUUAUGGGACGGAUGGAGUACAUAUCAUUCGGACUCUGUUCUAGAUAACUGAUCACCAACCGAAAGAAUUUGAAUUUGUAAGCAGCAGUAAAUUAACUGGUCGUAGCUUAAAUGAUUGGUCUCUGAAUCUGAAUGCCUGGACGAUAUCCGAUCUGAGGGUAGCGGUUGCUACUACCAAAUUCGGCAGCCGUGACAGCUCCGGCGGCGUCACAUGCCAUCAUCACCAACUCCGGCGAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.42%
ME_num:
MEP:
69.51%
HE_num:
HEP:
28.86%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.52
Avg Expression:
6.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 3.09109440808649 | 0.0364874944347078 |
| 2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.816313837632 | 0.00610367398115005 |
| 3 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.99716712736163 | 0.029932031291632 |