Chr:
Chr12
Start:
5042527
End:
5044709
Strand:
-
Ref_name:
OSA-LNCN2110
Sequence
(OSA-LNCN2110.1):
GUUUUCGUUCUUUGUCAUCGUUAAUAGCAGUUUUGAUUUGCCUAUCACCGUUUUAUAGUAAGUUGAAUAAAAUUUUAUUCGUGUACUCCCGAUCCGAUAAUCUCGCCCCCCAUCUUCUUGUAUUCCCCUCGCUCCUGCUGCCGCUCACCUCGGCCGCCGGCGUGAUGCUACUGGCGCAACCAUCGGAUCCCUGCGCACGAGCUCCGGCCUGUCGCUCCCACCACCCGUGACCUCCAUUGCUGCCAACGUUGGCCGUGCGCUCUCACCACCACCAUCUCCAGAUCCUUGCCGAAGUGCUCCCGCCACCACAACCCCAACGGCGGUGGUUCUUCCCCAAGUUCUCACCGGGCACACGAGGGAGGAAGGAGGCUUGAUUUGGUGCCCCCACCCCCCUUUGCAAAAAUCAGGAGGUUGAGAGCUGAUUAGUGAUUGCUCGCUGGAGGUGCUGCCUGGGGGCUACAUCGAGCAAAAGGGUCACAACAGGAAGGUAAUACUAUCAAAUUUGCCAGGUAGUUCAUACGUGCUGAUUAUUAUUAAGGUUUAUUUGCAUGUCUAGUUGUCUACUGUGCUGCUUCUCCCUAUCACACAAUGUUUGAUAUGGUACGUUCCACCAAAUUCUUGUGCUUGUGAUAGCUCUGCCACUUUCAUGAGUAAUUGAGGAUUACAAGCAAUUAAUUCUAUUUUGUAGGUAAGCAUACUUCAGUUGCUAGCUUUAAUCAAGGAAGAAAUUCAUAACUGUGUAUCAGUGUGCAUGACUACAGGUAACCGGGUAACUGGGAAUGAAUUGAUGCCAUCAGUUAAGCAGGCUCAAUGUUUGAUGUGAAAUUCAGGGACAGCUUCACUCUUCGUGGUCCUAUAAUCUUUAUCAGGAUUGGAAUUUUGGAACUUAACUAUAGGAUUAAUCAUUGUGUUGGUAAAUGUGUCGCCGUGUAUUAAAUUUCUCUUUCAGUUUUUAGAUCAAGAAUUCGCUCUUUGAUCAACUGUUACUGAAUUAUAAUACAAUUGGGCAUAUGUGUAGGAACUUUGCAACGUUUAUGUGUUGAUAAUUAUGCUGCCCCCAUUCAUGACCUCAUCCCUAGUCCCCCAUGAAGACUCUACCAGGAACAAAAUUCAGGAUGAUGCCUCCUGGUCCGAACAGUUUAGGGAAAACUCAAUAGAGCCAGAGGAUCUACACAAGCCUUCUAUUCAUUGUUUUAAAUUGCCAUCAGUUUCAUCAAACAUAAUUCUAUCUAAUUUGUGCUCUGUAUUGCUUGAGUUAAUUAAUGAAUUAUCAUCCAAAGCAUAACUUGUAGUGAACUUAUUUGCUACAAAGUGUUAUAUUGUUCCAUUUAGCUAUUGAAGUUAAAUUGUUCUUAUUUAUAUAUUGCAGUCGAAUAUUGUUUAAGAAAUAAAUACUAAGUUUGCAAAACUUAUCAAUUGAUAAUUCUAGACUGUAACUGUACUAAAGUAUUUUGCUUCUCAGUAUCCUUCUUUUUAUAUUUAGGUAACUGAACUAACAUAUAUUAGGUUAUCAGAACAACAUCACUGGAGGUAAAUUUUGCUCUCAAAUAAGUUAUAUAUUACAUGCCAAAUAUAAUGUAUAUUAACUAGUAUAAUCCUUGCCAGUGGUAGGAUUUAUGAUGAAAUGGAUGAGGAAGGUGCAGUCGAAGACAUAUUGAAGGGUUGUUUCUCUAUAUAAUGAUUAGCGGUUCUAUCCAUAAGACCUCCAGAUCGAAGAAUAUUUUUUUGUCAUAUGUAACAUUGAAGCUCGGGUGUCCCAGUUAGAUUAGGUAUCACAAUGUAUCCCUGAAUAUUUUAUUACAAUCGAUUCAAGAAUGAUAUCAUUAUUCUUGUACUGAUUGUUUUGAAAUAUUGCUAUGUUGUGCAAUAAUAUAUGAGAUUGUUAACUCCAAAAUGUGCACUUGCAAUUAUUUCCAAGGGAGUAAUGGAUCUUAUUGUGAAUUAAUAAUGGUG
Sequence
(OSA-LNCN2110.2):
GUUUUCGUUCUUUGUCAUCGUUAAUAGCAGUUUUGAUUUGCCUAUCACCGUUUUAUAGUAAGUUGAAUAAAAUUUUAUUCGUGUACUCCCGAUCCGAUAAUCUCGCCCCCCAUCUUCUUGUAUUCCCCUCGCUCCUGCUGCCGCUCACCUCGGCCGCCGGCGUGAUGCUACUGGCGCAACCAUCGGAUCCCUGCGCACGAGCUCCGGCCUGUCGCUCCCACCACCCGUGACCUCCAUUGCUGCCAACGUUGGCCGUGCGCUCUCACCACCACCAUCUCCAGAUCCUUGCCGAAGUGCUCCCGCCACCACAACCCCAACGGCGGUGGUUCUUCCCCAAGUUCUCACCGGGCACACGAGGGAGGAAGGAGGCUUGAUUUGGUGCCCCCACCCCCCUUUGCAAAAAUCAGGAGGUUGAGAGCUGAUUAGUGAUUGCUCGCUGGAGGUGCUGCCUGGGGGCUACAUCGAGCAAAAGGGUCACAACAGGAAGGUAAUACUAUCAAAUUUGCCAGGUAGUUCAUACGUGCUGAUUAUUAUUAAGGUUUAUUUGCAUGUCUAGUUGUCUACUGUGCUGCUUCUCCCUAUCACACAAUGUUUGAUAUGGUAAGCAUACUUCAGUUGCUAGCUUUAAUCAAGGAAGAAAUUCAUAACUGUGUAUCAGUGUGCAUGACUACAGGUAACCGGGUAACUGGGAAUGAAUUGAUGCCAUCAGUUAAGCAGGCUCAAUGUUUGAUGUGAAAUUCAGGGACAGCUUCACUCUUCGUGGUCCUAUAAUCUUUAUCAGGAUUGGAAUUUUGGAACUUAACUAUAGGAUUAAUCAUUGUGUUGGAACUUUGCAACGUUUAUGUGUUGAUAAUUAUGCUGCCCCCAUUCAUGACCUCAUCCCUAGUCCCCCAUGAAGACUCUACCAGGAACAAAAUUCAGGAUGAUGCCUCCUGGUCCGAACAGUUUAGGGAAAACUCAAUAGAGCCAGAGGAUCUACACAAGCCUUCUAUUCAUUGUUUUAAAUUGCCAUCAGUUUCAUCAAACAUAAUUCUAUCUAAUUUGUGCUCUGUAUUGCUUGAGUUAAUUAAUGAAUUAUCAUCCAAAGCAUAACUUGUAGUGAACUUAUUUGCUACAAAGUGUUAUAUUGUUCCAUUUAGCUAUUGAAGUUAAAUUGUUCUUAUUUAUAUAUUGCAGUCGAAUAUUGUUUAAGAAAUAAAUACUAAGUUUGCAAAACUUAUCAAUUGAUAAUUCUAGACUGUAACUGUACUAAAGUAUUUUGCUUCUCAGUAUCCUUCUUUUUAUAUUUAGGUAACUGAACUAACAUAUAUUAGGUUAUCAGAACAACAUCACUGGAGGUAAAUUUUGCUCUCAAAUAAGUUAUAUAUUACAUGCCAAAUAUAAUGUAUAUUAACUAGUAUAAUCCUUGCCAGUGGUAGGAUUUAUGAUGAAAUGGAUGAGGAAGGUGCAGUCGAAGACAUAUUGAAGGGUUGUUUCUCUAUAUAAUGAUUAGCGGUUCUAUCCAUAAGACCUCCAGAUCGAAGAAUAUUUUUUUGUCAUAUGUAACAUUGAAGCUCGGGUGUCCCAGUUAGAUUAGGUAUCACAAUGUAUCCCUGAAUAUUUUAUUACAAUCGAUUCAAGAAUGAUAUCAUUAUUCUUGUACUGAUUGUUUUGAAAUAUUGCUAUGUUGUGCAAUAAUAUAUGAGAUUGUUAACUCCAAAAUGUGCACUUGCAAUUAUUUCCAAGGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.73%
ME_num:
MEP:
18.29%
HE_num:
HEP:
60.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.78
Avg Expression:
33.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.16082586801694 | 1.77630056013512e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.1436641705403 | 5.49307464526453e-07 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -1.39790260966029 | 4.09766864011955e-06 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.1912310534513 | 0.00025050287716118 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.18703364720447 | 4.75611866083033e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.16711157187778 | 2.07579080920276e-07 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.14525476717533 | 3.94586017762873e-05 |
| 8 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.1453480041195 | 4.11972482161656e-05 |
| 9 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.14543808065147 | 3.97958019528348e-05 |
| 10 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.26437931653722 | 6.09965277099129e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.33935391706413 | 1.09707905268783e-06 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.2775679434158 | 1.12608932497368e-08 |