Chr:
Chr12
Start:
3805040
End:
3809284
Strand:
+
Ref_name:
OSA-LNCN2090
Sequence
(OSA-LNCN2090.1):
UAGCUUUUAGUUUGUGAGAUUUGGGAAGCGAGGCGAGAAGAGCAAAGAAAUAGAACUCGAGAGAAAUAGAGAGAUGAGAGACUUGACAUGUGAGUCUAGGGGUAUUUCCGAACUUUCACACGGUUUCUCUCUACUAUUCAAUCAUAAAUGAAUAUUAGGAUAGGUGUAGUGUUCAUGAGCUGAUUUACAAAGUGCAUUUCCCUUGUGCAGUGUUCUAUAGAAAAACCGCAAAGUCAUGAUACUACCUCAUUUUUUAAAUGUAUGAUGUCGUUGACUUUUUUCAUAAUGUUUAAUCAUUUGUUUAAUUUAAAAAUUGAAUACAAAUAUAUAAAAGUAUAAGUUAAGAUUAUAGUUUAUUUGAUAACAACAAAAUAAAUAAUAUUUAUAUAUUUUUAAUAAGACGAAUGGUCGAAUGUUACGCAAGAAGUCAGCGGCGCCAUACAUCUUGAAAUGGAGGGAGAUAUGGGAUUAAAAAUGAAAGUUAAAGCCAUGUUUUUUUUGGUAGACAAAGUUUUGGUUUUUAUUUUUUCCUAAUUUUCACCGGUUUUCUAAAGGAAUGGUUUUGUUAGGUGGGUGGGGCGUAUGAUCGUUUUCCUCCACUAAUUUUGUUUGCAUACAUGUAGGCGUACAAUGUGCGGUGAGGACUCCCAUUGCUUGUGGUUAGUGUCCAAACAUCCGAUAUGACAAGGACUAAAGUUCAGUCCCUGGAUCCAAACACCCCCUAAUCCCAAGGGACAGAGGCCGCUUCCCAUCCAAGGUUGGGUUGGGUUGCGUAGCUUGGGGUUGCCUACUAAUCCCCCCGUCCAAAAAAACUUAACCUAAUACGUGGAUGAGACAUAAUCUACAACAAAUCUAGACAGAGGUUAAGUUUUUUUUUUUUUGACAGAAGGAGUAUCCGAGUAAGUUAUGGCCGCCUGUUGCAGCUUGGGUUGCCUAGUUUGCGGGCUCCUCGGUGCAGCUCUUUUCCUGGGUUGCUUGGAACCAGAGGGGUUGCCACUUGGCCGUCUACUCGAUCGGCGGGUCGCUUACGCGAACCUGCUGACCGACGAGCUCGAGUACUCGGAUUUGAAAGCAGAAACAUCAGGCAAUGAACAUUUCAAUGCUCAAGUACUCUCUAUCUUGCUCGCACUCGCACAUCUGCAAGGUGUUCUAAUCCUAAUUGUGUAGUGAUUCGAUUGCAAGCAAAUUUACCCAUUUCCUCCUAUCCACGUGUUAAUUAACAUUGCAUUUUGGAUUUUACUGAUCAAACUCAUAUGAACUACAGCAUUGGAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.07%
ME_num:
MEP:
15.04%
HE_num:
HEP:
5.69%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.91
Avg Expression:
3.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.06973498244167 | 8.67167562268735e-09 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 10.2467442806706 | 8.08812043035318e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.36124503851413 | 5.24184445237693e-14 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.23065592374931 | 1.27379390196621e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.65830127257935 | 1.54331443853407e-17 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.57488090502486 | 5.92490483850346e-10 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.64213595518434 | 0.00614596568330387 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 10.879725522353 | 2.30286531667276e-15 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.31654652220543 | 1.0125886531111e-15 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.34566977590249 | 6.30491713385617e-10 |