RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2086

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

3733423

End:

3735958

Strand:

+

Ref_name:

OSA-LNCN2086

Sequence
(OSA-LNCN2086.3):

CCCAUCUUUCCCGGAUGCCUCUCUCCUCUCCAUAAUCCAAAGCGGCGGCGCGUGCAGGCAGCGGCGGCGGCAAGGGAACGGCGGCGGUGCUGUGCGUGCAGGUGGGGGAGCGGCGGCGCGCAGGCGGGGCGGCGGCAGGGGAACGGCGGCGGCGGCGCACGUGCAGGCAGGGGCUGCGGCAGGGGAACAAGAGGCCGCGGUGCGUGUGCAGGUGGGCGGGCGGCGGCAGUGGAACAAGCGGCGGCUGCGCGCGUGCAGGAGGGUGCGGCGGCGACGGCGCGUGCAGUGUGGCGGUAGGGGGACAAGCGGCGACAGCGGCGCCUGCAGGUGGUGGCAACAACAAGGGAACAAACGGGAGCGGCGGUCACCAUGGUCAUUUUUAGGGCAACUCAUUGGCUUCGAUUUUGGGCACAACUACAAAGGUGUGAUGAAGAUGAAGAGUUUCAUGUCGAAAGUUGGAGACUACGGUUAUGCAACUUUUUGCCAAUUAUGAUUGGAGAUUUACAAAUAGACUUCAAUAAUU

Sequence
(OSA-LNCN2086.1):

CUAAUUCCUCAUUUCCCCACCCCAUCUUUCCCGGAUGCCUCUCUCCUCUCCAUAAUCCAAAGCGGCGGCGCGUGCAGGCAGCGGCGGCGGCAAGGGAACGGCGGCGGUGCUGUGCGUGCAGGUGGGGGAGCGGCGGCGCGCAGGCGGGGCGGCGGCAGGGGAACGGCGGCGGCGGCGCACGUGCAGGCAGGGGCUGCGGCAGGGGAACAAGAGGCCGCGGUGCGUGUGCAGGUGGGCGGGCGGCGGCAGUGGAACAAGCGGCGGCUGCGCGCGUGCAGGAGGGUGCGGCGGCGACGGCGCGUGCAGUGUGGCGGUAGGGGGACAAGCGGCGACAGCGGCGCCUGCAGGUGGUGGCAACAACAAGGGAACAAACGGGAGCGGCGGUCACCAUGGUAGGCAAUAGCGACUUCGUCGUCUCCAUUGCGCAUGACCACAAUCUUCGUCAACCGCCGCCGCUCACCUGACCCAGUCUUCGUCACUGCGCAUGACCCAGUGGAUAUCCGUCGGCGGGCAUGGGCACGGGCACGGGCAUGGGGUUUUGCCCGAUUGGCUUUGCGGGCAUGGGUCGGGCGUGGGCACGUGGGUCUUGGGUCAGGCAUGGAUUCACUCUGCUCGUGCCCGACCCGACCCAUUGCCAUCCCUACUUGCUCUUAUGCGACCUUGAUACGGGUGCAUCCGUCAUUUUUAGGGCAACUCAUUGGCUUCGAUUUUGGGCACAACUACAAAGGUGUGAUGAAGAUGAAGAGUUUCAUGUCGAAAGUUGGAGACUACGGUUAUGCAACUUUUUGCCAAUUAUGAUUGGAGAUUUACAAAUAGACUUCAAUAAUU

Sequence
(OSA-LNCN2086.2):

CCCACCCCAUCUUUCCCGGAUGCCUCUCUCCUCUCCAUAAUCCAAAGCGGCGGCGCGUGCAGGCAGCGGCGGCGGCAAGGGAACGGCGGCGGUGCUGUGCGUGCAGGUGGGGGAGCGGCGGCGCGCAGGCGGGGCGGCGGCAGGGGAACGGCGGCGGCGGCGCACGUGCAGGCAGGGGCUGCGGCAGGGGAACAAGAGGCCGCGGUGCGUGUGCAGGAGGGUGCGGCGGCGACGGCGCGUGCAGUGUGGCGGUAGGGGGACAAGCGGCGACAGCGGCGCCUGCAGGUGGUGGCAACAACAAGGGAACAAACGGGAGCGGCGGUCACCAUGGUAGGCAAUAGCGACUUCGUCGUCUCCAUUGCGCAUGACCACAAUCUUCGUCAACCGCCGCCGCUCACCUGACCCAGUCUUCGUCACUGCGCAUGACCCAGUGGAUAUCCGUCGGCGGGCAUGGGCACGGGCACGGGCAUGGGGUUUUGCCCGAUUGGCUUUGCGGGCAUGGGUCGGGCGUGGGCACGUGGGUCUUGGGUCAGGCAUGGAUUCACUCUGCUCGUGCCCGACCCGACCCAUUGCCAUCCCUACUUGCUCUUAUGCGACCUUGAUACGGGUCAUUUUUAGGGCAACUCAUUGGCUUCGAUUUUGGGCACAACUACAAAGGUGUGAUGAAGAUGAAGAGUUUCAUGUCGAAAGUUGGAGACUACGGUUAUGCAACUUUUUGCCAAUUAUGAUUGGAGAUUUACAAAUAGACUUCAAUAAUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

141

LEP:

28.66%

ME_num:

291

MEP:

59.15%

HE_num:

59

HEP:

11.99%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_differentiation_zone

Tau :

0.65

Avg Expression:

4.51

Tip: OSA-LNCN2086 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-2.674842253999530.0364388794849736
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-4.8434693106710.00710641536554518