RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2082

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

3663158

End:

3664992

Strand:

.

Ref_name:

OSA-LNCN2082

Sequence
(OSA-LNCN2082.1):

AGUUUUACUCAUCGUCGGAGAUCAAAGCCAAUGCCCUAACUUGAAGCAGGAACUUGUCGAAAAAGUAGAAAAGUAAAAAGGGUGGAGAUGCGCCGAAUUUUAUUGAUCUAUAGAGAUAGUUUACAAUAACUCCGGGUGUACAUAUUUAUACCCAUGGGUAAACACUAGUCCUUCUUGGACAAGAAAAACUUUCCUAAAGUACCCAUGGGUAGACACUAGUCCUUCUUGGACAAGAAAAACUUUCCUAAAGUUAAAAAGAAAACAUAAAGUUUUUAUCGGAUACUAAACACACUUUUCUAAAGAUAGAAGGAAACUAACAGACUCUUCCUAAUUAAUAGAUAAACUGUCAUGCCGCAUCCUCCUUGAACUUGGUCUCUUCUAGAUAAAUUUUCUUAACUGGAUAUAUCAAGAAUCCGACUGCUGGCGACUUGACAAAUCCCAUCGGCCGAUUCCAUAACUCUGAAGCCGAUACUGACUCUGGGCCGAUGAUGACUUCGGGGCUUACCAAAUUUUGGCAUUAACAGGACUCUGAACCGUAAGGGAUAGUCUUGCAUUGUAAUGCUAGCUCUUCAGACUAUCUAAAGAAGGGUUAGAUGCCUCUUGGGGCAUAAUCACACAUAAGAUCAUCAGAUCGAUAACACAAUCGGCGGAAUAUUUCCCCAGACAUGAGUAGGGUAUUAUUUCUUAUCGAGAAUGCCUGAACCUGUAAAAAUUUCCUUGUAUCAUAACCCAUCCACUUUUCUGCUUGUUCGCUACCCACUUUAGAUUAGCCAAAAUCUAGUUUUGACAUUUAUCGUUUAAAUUGGUGGGAGUUUUUAUCAAUUAUAAAAGUUGUCUUCAUCUGUUACAACGCGCAAUAGUAUAUCUAUAACUAAUAUAAAUAUUUGUAUUUUUCCAAUCAUCACAGUAUUUUUGGGUCCGUCAAUCCGACCUAGCGCAGUUAGGUCAGUACAAUGGCCAAAGAAAAAAAAAACAAGAGUUUGAUACAAAAUCAUCUACAAAUUAAACCAACAGACUCAGAAUCGAACUCAAUAAAAUCAGCUGGGAUGAUCAACGGGAUAGAAAGUUUGAAAUCAAUGGAAUCAAGCAAAUUAAUCACAAAGCAACCUCGAUUUAUCGUUUUGACGAUGGCGACAAGCUCGUCAUCCGACGAGAGGAUGGGCGGUGGUGGCGAAGGAAGAUGGGGAGGAGAGGCGAGCGCCAGCGCCUCGAGACGCGCCGUCGUCGAGGCCGCUCCGCCGACCCGCAGGACACCGCUGCCACCGGAUCUACCCAUCGGAGGACGCCGCCGCGGCCGCUCGCGGUGGAGAAGGCCGUCGUCGCCGUCGCUAGCGGUGGGAGAGGGCACCGCCGUGGCCGCACACGAUGGGGGAGGGCGUCGCCAUCGCCACCGCUGCUCGUGAUGAGGAAGGUAGCCGCUGCCCCGCGUCAGUCGCGAGAUCACCGGCCGCCGCUGAGGAAGAUGGGGAUCGCGGUAGGGAGGUAGCCAUCGCUAUCGCUGCCGUCGCCGCCGUUGCUCGCGGUAGGGCAAGUAGCCGCCGCCCCGCCUCCGCCGCGAGAUCGCCGGUCGCCGCCGCCGCCGCUAGCAAUGGAGGAGGGCACCAUCCUGGCCGCUCACGACGGGGGAGGACGCCGCCGUCGCUGCCGCUGCUCGCGGUAGGGAGGUAGCUGCCGUAGCUCGUGGUUGGGAGGUAGCCACUGCCGUCGCCGCCACCAUCGUCGUCGCUGCUCGUGGUAGGGCAGGUAGCCGCCGCCUCGCCUUGGACGCGUCGCCACCGCCGCCGCGCCACUCGCGGUUGGAGAGGGAGGAUAAUGAGUUUAGGGUUAGGGUUUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

338

LEP:

68.7%

ME_num:

144

MEP:

29.27%

HE_num:

9

HEP:

1.83%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.95

Avg Expression:

5.70

Tip: OSA-LNCN2082 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated2.694875545645251.49109159650958e-12
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min"2.438496370777810.0172325257196303
3Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated1.981128098884218.27033950784749e-08