Chr:
Chr12
Start:
2637605
End:
2639138
Strand:
+
Ref_name:
OSA-LNCN2061
Sequence
(OSA-LNCN2061.1):
CCACCCCACCUACCCUUCUCCAUCUCCCUCCUAUCUUCUUACCCUUCUCCAAAUCCACUCUUCCAUCCUCCUCCCUCCCCACCGAGGCGCAGGCGACGGCGGCUCCGGCAGCGGCAAAGGGGAUGGGUGGCGGCGGUGACCGGGCUCGGCGGCGGCCAGUCUCGGCGACGACGACACGUGGGCGAUGGAUCCGGCGGCGGGCUCUCCUUGUCCUCCUCCCUCCUCCACCGCUGCCAGUUGCCGUCGCCACCACCGCUGCGGGCUGCCAUCGCCUCUACCGCCUCUCCGCCGCGAGCUCAGGGCCGGCCGGAUCCGGCUGCCGCGACGUCGGGGGUGGCCGGAUCCGCUGCCGCGUCGACGGGGGAGGCCGGAGCCACCACCACCACGACGGGGGAGGUUGGAUCCGCCGCCGCGAUGACAACGUGACCGCUGCUGGGCCGCAGGCGGCGGAUCCGGUCGUGACGAGCUCCUCCCCGUAGAGGGUGACGAGAUCGGCGUAUUGGGAUUGGAAUUGUGGGUUGGAGGAUUGGGAUUGGGGAUUUUAGGGUUUUUUUUUUUUUUGCAGGAAUGUGAAAUGUGAUUUUUCGGUUUGUAAGUUCAUUUGUUCUUGAUUUCUCUCUACCGUUCUCUGCUUGCUUUUCUUUCUCCUAGAGAUCGAUCGAUAAUUAUUUGAGCUCUUAUGGUGCAUGUGAUUGUUUAUGCCAGCAAAAAGAGCAUGGGUAAGUAUCUGUGGAAAUUUUUGAAUGGUGGAGCGUUGACGGGGCUGACGGAGCGCCGCUUUUUUUUUUUUGAAACUUUGCAGUAUUAACACUGGCGGCUCACAGUGUAACCAGCCAGCGAUAAUUCAUUUUCCCUAGUGGCCUAUCUUAGGCUAAACGCCAGCGAAAAUAGAUCUUUGCUGGCGGCUGGCUUAAGACGACCACCAGCGAAAAUGAAUUAUCGCUGGCGUUCGAUAACUGCUAGCGAAGAUCUUGAUUUUUAUUGGCCUUUGUUUGUGGCGGCUCCAAAUUCCGCCAGCGAAAGCCAAAAUGGCCGCCAUGAAAGAUGGUUUUCGUAGUAGUGUAAGGCUAAGUAUCACAAAACUAAAAAUUUAAUAAUAAAAUUACCACAAAACUGUAGAGUUUGGGGUUUAAACCCUUAGCACUAAUGUUAUGGUUAAGUUAUAAACUUUCAAGUUUUGUGAUUGAAUUGAUGUUAAACUUGUAGUUUUGUGAUAAAAUUUGUUAUUAAAUCUGUAGUUUUGUGAUACUCCACCUUAAAUUUGUAGUUUUAUGAUAAAUUUGAUGUUAAAACUAUAGUUUUAUGAUUCAUAUAUAACUUAAAUUAGUUUAGUGAAAUUUACUCUCUUUUUUGUUGAUACUCAAAUUGAAGCAUCAGAAUUCUCUGGCCAUUUGAUUAAUCGAUUUGGAUGGAAACUUUAAUUUGAUAUCCGAUUUGUCCUCCAAUAUAUCAACAAACCAGAGUGCUAUAAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.37%
ME_num:
MEP:
61.79%
HE_num:
HEP:
27.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.66
Avg Expression:
11.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.11851434187879 | 1.22252957589619e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.90991302789712 | 8.40458621395077e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.93478787977167 | 3.33932328473493e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.36840904406823 | 0.0445797907133197 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.00722136119664 | 0.000105901475773554 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.40617484149129 | 0.0155753451390853 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.07881991293531 | 2.6771776079759e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.27065857964693 | 0.0314810739760736 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.66149488421523 | 0.0023368881947924 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.92199908787954 | 2.98561989056264e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.02181237600457 | 3.55743212139386e-06 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.55557066982157 | 0.0429493110766693 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.30546007814523 | 1.03190413363577e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.16035960414457 | 1.58395195159234e-06 |