Chr:
Chr12
Start:
2210435
End:
2212403
Strand:
.
Ref_name:
OSA-LNCN2052
Sequence
(OSA-LNCN2052.1):
GUGCUCUUAGUGGAUUCUUAGUGAUAGAAUAUUUUUGGGAGCCAUUUUUGCAAAUGGGUCCAGACCGGACAGAGAAGGCUGGCCAGAAGUUCCGGUCCCUGACAUUGCAUUGAAUGAAACUUGCCUAAGUGUUGGCCGGAAGUUCCGAGGGUCAGGAACUUCCGGACUUCUUCCAGUUCAAAAAUGUGAGUAACGGCUAGACGUCACCUAGCCAUUAUAUAUAUCCAGAUCGCACCCAGCUCACUUUUUGGCUAUUCCACUUCAGUUCUUUCAUCCCCUAGGUUGUUCUAGCCUCUCCCAAGAUCCCUUUGCUUCCUCCACUCAAAUCUAAAGCCAUUCUUGUGAGAUUGAGAGAAUAGAUGAGAGUGUAGGAGUGAUUUGGAGAAGGUUUGAAGACUAGGUAUGGUUGAGUACUUUGGAUAUCUUGUGGGUUGUCACUUGGGCUUAUUACUCUUGAAGAUCUUCUCCUAGACGGAUAGGUGUUGCCCGCGAGCUUCCAAAAUCUUGUGGAUGUCCCGGGAAAGUUGGUGAAGGUUUUCCUCACCUCCGCAAGGAAACGAGGUAAGUGAGUAAAGAUUCUUGUGCAAAGAUUUCAGAGGUUCUCCUUGGUAGAACAACUUGCACUUGUGGUAUUUUCUAGAAGUAUUUGUGAGUUGGAUCUUGGUGGUCAUUCAAAUUCUAGAAAAUGACCUAGGAGUGUUUUGUUUAAGGCCUUGGACUUCUUCUGGGUUCUUUGCACAGGUGAGGCAGGGGGUUAAUCGAGACCCGGCUCUUUGGAGCAUCUCAACGGAGAGUAGAAUUGAAAGAUCCGAACUUCGGGAAAAAAUUCCCCUUGUCUUCUCUGUGAUGAUUCUGUGCAUGCUGCUGUGAUUGUGUAUCUGCUCUGUCUUCCUGUAGUUUAAUUCAUGCAAAUUAGUUUAAGUCUCUGCUAGAUCUUCAGGUUUUUCUUUGCUCGGAAGUUCCGGACAAUCUGAGCAGACUGGAAGUUCCGGUAUUCCACACCCGGAAGUUUUGGUCCUGCUGAAUUUUACCGCUGCGAUUUGUUUGUGAAUUUCAGGAAAGCCUAUUCACUCCCCCCUCUAGGCUACAUCUUUGCGCGUUCAGUUGUAACCUGAAAACAAAGAAAAUUAUACCACCACCCACGCACCGACAACACCAACACACAGACCCUGGAGAAGGCUAGCACCGGACCGGCCGUCGCUAAGCGUGACUGGCCACCGUUAGGGCAAGAAAGAAUGUACAGCCGGGAUUGCUCAAAACCCAACCCUUACAGCCGACAUAGAACCCUACUCUAUACACAAAAGAAAGUACUUACUAUAGUCUACUAAUACAAGCAAUAUGAACAGACUAUUCCCUCUAUCUAAAAAAAUUAACCUACAUGAGUAGGUUUGGAUGUAACAAUACACAAUAAAUUUAGAUAACCUUAUAAUUCAUUUUCCUACGUUUUAUCUAGAUUGAUUUUGUUUUAAACAGAGAGAGUACGUACUCAGUACAAUCAGCCUGAACAAACCACUAUUGAGCAGCAGUAUUAGUGUGGAGUAAUCAACUCACCAGAAAUCAUGGCGACUAGCAUCGAUCACGUGCUAUCAGCCUAUCACUGAUCGAGCAAAUUAUGCCUCCAUGCUGCCGCUUAAUUAGCAUACUUUAAGCUACUGCACUUUGCAAAGUGAUGUCUACGUAUAUGAAUAUAUCUGAUCACAUUCUCACGAUCUAGAAGGAGAAAAAGAAAAGGCUGUCUUUAACUAACUACUACUGCUGCUUUAGAGUAAAAAGAGCACUCUGCUAGAAUAAUCCGAACCUUCCUGCACGCAAUGAUCUUUUCCCUUUUGUUUUGUCUUCAGUUUAGCUAGCUAGUAACUGGUUUAAUUAUUAUUCACCAGCUCUCCUUCCAUAUAUGAUCAUACAAUAGUUUAGAAGCAGAACACAAACAUCAUCGGUAUGUAAAGUAAGAGAAAUUUUACGGUUGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.54%
ME_num:
MEP:
3.25%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
1.00
Avg Expression:
1.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.59741584820367 | 0.0023620476773501 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 7.39092986058894 | 1.33931221551037e-05 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 7.03694668110844 | 0.000417618424580069 |