Chr:
Chr12
Start:
1043343
End:
1048596
Strand:
+
Ref_name:
OSA-LNCN2031
Sequence
(OSA-LNCN2031.1):
GUAGGUAGAGAGGGUGCUUUGUGCAUUGGACCCCGGAAGGCAGGCAGGCUUUCUGGCACUGUCUUCUUCACUCGUCGAUCCACUCCACGCGAGGAUCGAUCGUCGAUCCUCAUCUCAUCACCUGCUGCUUGCCUCGUGCCGUCUCGAUCUUCUUCACGUCCAUCCAACGCAGCUCACUCCAAUUAUACUCUCUUACCAAUGUAGUUGGAGUACUACACAUGUGUUCAAGCUGGCUUCAGGUAAACCCCCAACCAUAAACACCAUGCAUAUAUGCAUGCAGAGUUGCAGACAUGCAUCAGUUGCUCUUCCUCUUGCUAAGUUGCUAUCUCCAUUGAUUAGGAGUUUAGAGGAGUAGUCAGCUGAGCUCCCGUGUCGAUCGAUGACAACGGUAGGAUCGAUACGCAGUUGCCCUUUUACUGCACUUGCUAUAGCUGCUGCACAAUAACAUUGGCAGUGUUGCAUCGAGCCAAUAUUGGCUGCACUGGGUAGCUAGCUGCACGCUGCUUCUUCCUGCGCUCUUCUGUAUAUAUGAGACAAACAAGCGGCGGUGCUGCCUGUAACUGACUCAGGUCACGCGCUAAUCCUGCGGCUGCCAAUCCUGCUCAAUUCCUUUGUAAUCUUGUCCAUAAUACUACUCUGUAUGUCUGUAUCGCUCACCGCCACCGAUCGAUCACCUGGCCGAGGCUGCAAUGAAUAUCUUCACGAUUCGCAUACCAGGAGUCCAGGACUGGCUCUGCUCAUCAGUCAUCAACUACAAAUGCACCAAGUACACAUACUGAUACUGUGUGUUCAUUCAUUGAGCAAUACUGCUCGUGAUUGUACAGUCUGCAUCACCUACAAAUGCCAUCACUGGCACAGCAAGCACGAGUAAAUAUGGUGCUUGCUCUCUGCUUCUGUUCAGGCUUUUAAAAUACUGGUAUGGUACUCCAGCCUUUUAUUUAAGAAGGUUGCAGGCUUAACAGUGUACUACAGUAUAGCAGCCCGUUUAAUUGGCUAGACAAGCUAGUAAUAAGGUAUGAUCAAUUCGCAUCAGUAGCCAUUGCCUGUAUCAAGAUUAGCAACAAUGCACACACUGAUCAUUGACGCAUGCAAUGCAUUGUACCUUCAUUCAAUUGCAAUUGCCUGAGAUGAUGUAGGAUGAUUAGGACAUGUUCCUGCUGCCUACUGUUUAGUGGAGUAAUUAGUACUACAACAGUGUACUAAUUAAAGUAGCAGCAGUAUGUAUAUUCAGGGGAUCAUUGCAAGUAGUAGGUCAACCAUGACACUGAUCAGUCGUAGCAGUAACCAUCACUCCACAGAUUGGAAAGUCUAGUGAUCAGCUUUUAACUAAUUCCUAGCCAUCUCGAGAACAAAACAGACGAAAUCAUGGAAAUAUUCGAAAUAUUAUACUGUAAAGUGGUGGGUCGAUCAACACAGGCACUAGAUUAACAUCAUAUUUACGUUACGUGCAACCGUUUUCUAUGACCACUACUUACGCCUAGCAAACUAGCCAUCACAGACAUAAAUUGCUUAACUGCAUCUAUAAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
17.48%
ME_num:
MEP:
60.57%
HE_num:
HEP:
21.75%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.90
Avg Expression:
26.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.99691289371319 | 9.95611534804253e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.50493037416003 | 1.04902349926e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.95656240194361 | 3.49279839294255e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.71019769072381 | 6.22211643128873e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.91619164200109 | 6.91005671218547e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.61799627686892 | 0.00379542555452156 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.20162723931045 | 3.51437299709519e-05 |
| 8 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 6.72974446875675 | 0.0330145097305028 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.96361934569443 | 0.000214852039307043 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.6849318741554 | 4.71461232885873e-08 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.60174772577195 | 8.83765582802648e-07 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.32689502793672 | 1.26301350527787e-06 |