RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2020

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

237069

End:

238388

Strand:

.

Ref_name:

OSA-LNCN2020

Sequence
(OSA-LNCN2020.1):

CCUCUCCACACACACACUCUCUAUCUCUCACGUGCGCGCAGGGCAACGACGGUGUUGGGAGUGACUCCGACGAGUGGCAGUGUUGGUGGCGGCUCCGAGGAGGAAUGGUGUGGGCGGCGGCUCCACCGGCUCGCCUCCUCGCCGCUUCCCCUCCUCGCCCCCUCCGUCGCCGGGCAUGACGAGCGACGACAAACAGCUCGCCGGCUACCCUCCUCGUCACCUCCUCCACCGGCCACAACACGCGACUACGACGGCUCGCCUCCUCGCCACCUUCGCCGCCGGCUUCCCUCCUCGCUGCCUCUGCCACCGGCCGCAACGCGCGAUGCCGCCGGCUCGCCUUCUCGCCGCCCCUGCCACCGGACACGACGCACGACGACGACGGCUCGCAUCCUCACCCCUUCCGCCGCCGGCUCCCCUCCUCGCCGACGUGACGACAACGACGAACGCGCCGACGCAACAACAACCGAGUCGAGGCGACGACGACGGCGCCGAGUCUACGACUGCCGCGACAACGAUGACGACGACGUCUGUGGAGGCUGCGAAUGGAGGAGGAGAGGCGGCGGCUUGGCUCCUCCCUCUCCUAUGUGGGGUGGCGGACAGAGGAGAGCCGUCAGCCGGAGGGGGAGGCCGGCGGCGGCGCCCGUGGGUAGGGGUGGUGGAUUUUUUUCAUUUGCUGAGAUGAUUUUCGCAGGCGAGCGAUAGUAUACCGGCAGUCCUUCCCCCGCCUGCAAAAAUUGUUUUGGGCCAUCUGGAAAAACGAUUUUUCUAGUAGUGACAAUGAAUAAUCCAAUCAAUUGCCUAAAAAAUCCAAUCAUCAAGUAAUUAAGCUUGCAAGUAAAAAGUACAUGAAUCGGGGUUGCAUCCUGAAAGAAAAAGGAAUCGAUGAUUUAGUUGUCCGCUCCAGCCGGUAGGAGUAGUGUAGUACGAAGAAAAGAUGAAAUAAUAAAGCAGAAGCUGCAUUCUGCGAGAAAACGGGACAGCGAGAUGUCAUCCACAAAAAAGCUUUGCUAACUGCCAUCUUCUCUUAAUUAGCAGAGUGGAAUAAUGUUGAUUAGUUUAAGCUUGAGCCUCAGAUGGACAUCGACAUCUCAUAUUCUCAUGCUUUAAUAUGUGGUAAUGGCAUUGGUGGUAGUCAUGAAGCUAGAACACUCUUGCAUUGUGUGGUUUUUUUUAUGAAUAUAUAAUAAAAUACGUACAUUGAAAACUAUGUCAAAGUCUUAGACCACGAGUAAAAAAGAAUCCAGGGAGCAGGAGGUUCAGAUGGUUUGAUUUGCUAAAUAUAUGUAGUAGUACUUCGUUGACAAUAAUACUCGAUCGUAU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

447

LEP:

90.85%

ME_num:

38

MEP:

7.72%

HE_num:

6

HEP:

1.22%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.98

Avg Expression:

8.09

Tip: OSA-LNCN2020 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae3.978500288105710.0247830240255317