RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN1994

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr11

Start:

27755951

End:

27758193

Strand:

-

Ref_name:

OSA-LNCN1994

Sequence
(OSA-LNCN1994.1):

GAUUUUAAUUAAUUAAAGAAAAUUAUUAUUAACAUGUUCUUACCAUCUCUUAAUUGUUGUACAUAUAUUUAUUACUGAGAUGUAGAUCCUUUGGUUCCACACUAUUUUGUUUUUCAAUUUUUUCUCUCUAAAAUAAAAGUUUGGUAGUCGGUGGUGGGGAGGCAAAACCACCACCACUACUCACUUUUCUUCUACCCUAUAAUUCAACAAAUACUUUCACCCAUCCUUUCAUUCUUUCAUUCAUCACUCAAUGGUUCAGAUUCAUCCUGUGAAAACUGAACGGUCUAGAUCGAUCCCCGCCUCCCACCUCUGUCAAACACGUAAUCCCCCCGACGCGUGAUCUCCCCGACUCCCCCAAUCCCGCGUCCGCGCCGCAUCCCCCUUCCCAUCCUCUCUCUCUCUCUCUCUUUCUCGCAUCUGUCGCCUCCCCAAUACGCCGACGCCGUCGCCUCGCCAAUACGUCGCCGCCGUCUUCUUCCCCACCCUUCCUCACUCUCGCGCCUCGCCGCCACGCCACCCCACCGCCGUCGCCCCCUCCCUCAAUCGCCGCACGCCGUUCUGCUCCUUGCCACCACCGAUCCCCGCCGCACGAAGCCGUCCCGUCGCCAGGAUGCCGUCGACGCCUUCCUCACUGCCACCGAUCCUUUCUCGGUCCAACGGCGCGGCUGAGGCUGUGGAAUCUAGCAAUCGAUCCGUAUUCUUUUAAACUAUGCUACUGUAUGUGUGCAGGUGGUUAUUGAUCUCCGCGCCUUGGCCUGCAGCAAUGGACAACGCUGUUGGGAUCCCUAAACUCAUGAUUUGUCUGUAAUAACAGUUGAAUUUAACUUCAGAAUAUUGCUGCUAGCUUCCGGCCUCCUCAACAUCAGAUCAGUGUUUCAGCAUUUGAUUGAAUUUCGUACAUUGGGUUUCCAUCAAGUCGUCGUCUGAUCCCCUUCGCGCCUCCUCGCCCCCACGCCGCUAGCCAGGUUGCAGUGUGAGAUCAAUUAAGAAGAAUCAGCGCUGGCUAGGCUAGCUCACUGUUGUUUCAUUCUCUGUUUUCUCAUUCUCUGUCUAAUUUAUCUUCUUGUAGGCUACAGCCAUCCUGGUGUUUUUAGUGCUGUACCUCUCUAUAUAUAUCCUUUCUAGGUAAAUUUUAACCCCUAAUGUUCACUUUUCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

203

LEP:

41.26%

ME_num:

240

MEP:

48.78%

HE_num:

48

HEP:

9.76%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.86

Avg Expression:

8.88

Tip: OSA-LNCN1994 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h3.018707249216780.0017439679790582
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h2.708799517835030.0474886139446608