Chr:
Chr11
Start:
28081852
End:
28176613
Strand:
-
Ref_name:
OSA-LNCN1993
Sequence
(OSA-LNCN1993.1):
AAAGCACUACCGUGCACUACCUAGUCACAUUCUUAAUAAUACUGGUCGCUAACCCAUGUGUUGCAUGGGCUAUAGUUAUUAACAACAUAAAUAUUAAAAAUGUAAUCCUGUGAUGAAUAUGUUGGUCAUCAAAUUUUCUUGAAAGUUAUACAUUUUCAAGUUGGAAUCUUUAAAAGUACAUAAUUAUACAUGCUUUAUACUUUCAAUUGUAAAGAAUCUUAUGAUUUAAUAAUUUCAAAAUUUGUAAAUAAAAUAUGAAAUUGUACUCGGUCUAGAGCCACGGUUAUCGAUUGUUCAUGAUUGAAGUCCCAAUUGUAACUUUUAUGAUUUAAUAAUUAUGAAAAUAGUAAAUAAUACAUUUUAGUUGUAUGGUUUGGAGUUCACAUAAUUACAACUUACUAAUUAUGAAUUUAAAAAAUGAAAUUAAAUUAACAAAUUUCUAAAUUGGGAGUCAAGAAAGGUGAAACUCUGUGAUCACUAUGAUGUCUGAUUUCAGAAUUAUUAAUUUUGUAAAAAUAAAACUAAAGAGCCCAUGUUACUUUUUGUGGCAUAUUUUAAUUUACACGAAUUCAUAUAUAUAGAUCGAAUAUCAUAGGAAUGCGAACCACCUAAUCAACUGUGGUAAGAUCUUUCUGCCUAAUGAGCUAGCAUCCCAGAAGUUGCACAAUUAAUCUUGGUUUUAACACAAAUUCUUUGAUUGAUCAAUGGUCAUGGUAAUACGAUUGACCUAAUAAACUACAGAUCUUUUAGUUAACGUUUAUAGUAAAUGUGAGCGCGCUCUGGGGAUACCCAUAAAUACCAACAUUAUUUGCAAGGGGAAUAUUUAUACCGACCUUUUAUUAAUAAGUAUCACGUCUGUUGGGAUUUAUGCCAUCCCAAAGUCUGAUUAUCCUGACCUUGACUUUGGACGCUUCCUUCGCAUUGUCAACAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.93%
ME_num:
MEP:
14.63%
HE_num:
HEP:
14.23%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.81
Avg Expression:
5.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.29367928094626 | 0.00572847497784541 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.92316993695946 | 0.0115787537508518 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 7.36209550248139 | 2.34255133528191e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.73379525873569 | 3.73130497504358e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.53531288028558 | 2.53941255295862e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.1198659921108 | 8.06996374471764e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.48226176078772 | 0.0264866019132895 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -5.61033564905875 | 0.0248378823254009 |
| 9 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -4.48623297126446 | 4.01327896662731e-06 |
| 10 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -4.48626042879638 | 4.12142693386288e-06 |
| 11 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -4.48640108780406 | 4.03378439083491e-06 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.91304761300564 | 0.00820387079810334 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -5.24896187770125 | 0.0158712397839963 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.9167239334869 | 8.74229574216663e-06 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.23769908342182 | 5.78924890182861e-05 |